Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03723 ATGGGGAGGAAGTGCTCACATTGTGGAGTTATAGGTCATAATTCAAGGACCTGCACATCTTTGAGAGGCTCTACTTTCGTTGGACTTCGCCTCTTTGGCGTGCAATTAGACACTTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCCTTACCCTCTTCATCATCTTCATCATTTTCTTCTTCAAGAATAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTATCTATCAGATGGTCTCATAGGTCGAGTCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAGGGTGATTGGAGGGGAATCTCAAGAAACTTTGTGACCACAAGAACTCCAACACAAGTGGCAAGCCATGCGCAGAAGTACTTTCTTAGATTGGCAACTATAGATAAGAAGAAGCGACGTTCTAGTCTCTTTGACTTGGTTGGTAGCAACAACCCCAGCATAGCAGGTTGTAATTCAGTTTCAGCTTATCATCAAAATGATGAGTCCAAATGTGAAGTTAAGAATAATGATGCCACTTTGTCGTTGCTAGGGCGTATAACCTACTTTCAACAAGAAACCAAATCAGATTATAATAAGCAAGAAAATCTTGATAATTTCCCTCATCAAGTTCCTAATCTGGACCTCACTCTCCATTCCTGCTTGGGCCAATTAGTGTGA 711 0.4191 MGRKCSHCGVIGHNSRTCTSLRGSTFVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRITIDENSDRTSFGYLSDGLIGRVQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDLVGSNNPSIAGCNSVSAYHQNDESKCEVKNNDATLSLLGRITYFQQETKSDYNKQENLDNFPHQVPNLDLTLHSCLGQLV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03723 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Lapu3g03723 236 FunFam transcription factor MYB1R1 93 144 - -
Lapu3g03723 236 SMART sant 91 141 IPR001005 -
Lapu3g03723 236 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Lapu3g03723 236 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Lapu3g03723 236 CDD SANT 94 139 IPR001005 -
Lapu3g03723 236 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Lapu3g03723 236 PANTHER TRANSCRIPTION FACTOR KUA1 3 188 - -
Lapu3g03723 236 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Lapu3g03723 236 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Lapu3g03723 236 Gene3D - 93 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03723 Lapu-Chr3 60710267 60711893 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g03723 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03723 - - gmx:778093 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03723 3 60710267 60711893 Lapu3g03723 3 60710267 60711893 ECH