Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03712 ATGGCTTTATCCCTACCAACCCATTGTTCTCCCACCCTCATCCCTCTCCAACGATCCACCAAACTCACTTTCCCCACCCTCCGCCGCCTCAACCACCGTGTTTGCGTGGCCACCGCTTCCACTCCCCTCCTCCAAGTCAACGACCTTAGAGCCAAGATTGTTGAATCCAACGTCCAGATTCTCCACGGCGTTAACCTCACCGTTAACCAAGGAGAGGTCCACGCCATCATGGGAAAAAATGGCTCTTGCAAAAGTACTTTCGCCAAGGTTCTGGTGGGGCACCCGGATTATGAGGTTACTGGAGGTAGTGTTGTATTCAAAGGGGAGAATTTGCTTGAAATGGAACCTGAAGAAAGGTCTCTTTCAGGTCTCTTCATGAGTTTCCAATCCCCTGTTGAAATTCCTGGTGTTTCCAACGATGAGTTTCTTGTCATGGCCTACAATGCTCGAAGAAAAAAACTTGGTCTACCTGAGCTTGGTCCACTCGAGTGTTTTTCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAATGAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGATTTGGCTATTTTGGATGAGATTGACTCTGGGTTGGATGTTGATGCGCTCAGGGATGTTGCCAATGCTGTTAATCGGATTCTCACCCCACAGAATTCTTTGTTGATGATAACTCATTATAGACGAATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGAAAAATTGTTAGAACAGGTGACATATCAATGGTAGAAGCTATTGAGGCAGAGGGATACGAAACTGTCTCCGCTTTGACATAA 879 0.4653 MALSLPTHCSPTLIPLQRSTKLTFPTLRRLNHRVCVATASTPLLQVNDLRAKIVESNVQILHGVNLTVNQGEVHAIMGKNGSCKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLSGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPQNSLLMITHYRRILDLLNPTHVHVMDKGKIVRTGDISMVEAIEAEGYETVSALT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03712 292 Gene3D - 43 291 IPR027417 -
Lapu3g03712 292 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Lapu3g03712 292 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 22 289 IPR010230 GO:0005524
Lapu3g03712 292 Pfam ABC transporter 61 215 IPR003439 GO:0005524
Lapu3g03712 292 NCBIfam Fe-S cluster assembly ATPase SufC 44 287 IPR010230 GO:0005524
Lapu3g03712 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 275 IPR027417 -
Lapu3g03712 292 CDD ABC_FeS_Assembly 44 285 IPR010230 GO:0005524
Lapu3g03712 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03712 Lapu-Chr3 60569546 60575818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03712 57 275 Calmodulin-binding Proteins AT2G36910 23.276 3.51e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03712 K09013 - gmx:100811883 503.827