Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03711 ATGGAAGACTATGATACGCGGAGGGATAATGGTGGAAATGGAGTGGTAGTGGCACCGTGTACTTGCTCGCACGACGAATTTCGCGCACGTGGCGGTGGAAAAGGATTGTCGCGAGTTGTTGCTGCCGCTGCTAGAAACGGTTCTTCTGCTTCAAAATATGACATGGCTGTGTCTCGGAACGTTCAGAAAAAGCATAAGCGTAAAGGTCTCCAGGAACTGTTCACAGCCGATTACATTGTTAACAGAGTGTTACGGAAGGATGGTCCTCCGCTTGGTCAAGAGTTTGACGTTCTTCCTTCTGGACCCAAATATTTCACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAGGAGGAAGGGTTCCAAGAGTGCAATTCAAAGTCTTGCCGATTGTAATATGAAAGCACCTGCGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTCTGGAGGGCAACAAATCCTGATGCTGGAGACCTTCCAATTGGTTTTGGCGTTGATGGCCAAGAAGTTCCCTTACTTTCAGATTCTATAGGACAGAAACCGATCCATGAAAACAAAAGGTCACGGAAAACAGTAAACAGGAATGCAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATTGCAGGAGAAGAGGAAAATTTCCATGCAAAGAGTGGGGGAATTGAACCTATACGAGACTCAGCATCAGTCACCAAACGAAAAATGTGGACTTGCTCTGGATAATGCAATATCCGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACCGATCTGTTTAGGTGTTCTAATCATCTTGCTGCCAGTGGAATGCTTGTTTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATTCTGTCAAGATGAAGAAACCTATCCATTTGCCACCTTGGGACTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGGTATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCAAACTTCTTCTATCTGACATTGAAGTGGAGCTTACGAATGGATTTTCTCCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCTAAACAAGGCTCCTTACGCAGAGATGTCCTTAACAAGGAATTAAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAATATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTGGTTGATCTGGCGAAGTCAATGCAGATTGTTGAATTAAACCTTGCCGGCTCTACAGAGGAACTTGAGTCTTTAATATGTTCCACGCTTTCTAGTGATATTACTTTATTTGAAAAGATTTCATCAACTGCCTATCGATTGCGTATGAGCACAGTTATGAAGGACAGTGATGAATCTTCTGATATGGAGGACTCTGGTAGTGTTGATGATGAACTTAACGACACTGATACATGCAGCAGTGCTGATGATTATGAATATGATTCAATAAACTCCAGTATAAGAAAATTGAAGCGTGTAAACAGTCATAAAAATAATATTCTAAAAATGTATACTGAAATTGATGAGAGCCGTCCAGGAGAAGCGTGGTTATTAGGACTGATGGAGAGTGAATATTCGAACTTGAACATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCCTCTGGATCCAGCATCAGGATGAAGGATTTGTCAAAAGTTACAGCTGATTGTAATTCTAGCATCCAGTTACGTGGGTCTGGCGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGGGCAACTTTTGAATCATAAAATACATTTGAATTCTGATCCATGTACTGTAGACTCGTCAGCATTATTCTCAAGATTTCATAGTTATGAAGCTTCCTTCCAGAAAGGAAAAGGTTCATCTATTTCGCACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTAGATGATCCTGGCCACCGGAGGATATACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACCAATGAGGCGTTGTGTGCGTTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCACTATGCAGATCTATGTCCAGGATTAATGTCAATAGTACTGGAATGAGTTCTGTGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTAATTCTCCTGCATCTGATGTAGACAACCTGAACATGACTGAGACTGCTAAAGACTCTGTGTCCTCAGCTGGGGCCGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCAAATTAAAAAATGGATCCGTGTTCAAGAATACGATTCTTGGATTTGGAATTTTTTTTATTCAGATCTCAATGTTGTAAAGTATGGTAGAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGACGAAAGACACTGTAAAATTTGCCATATGACATTTGAACTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGATAAAGAAGACAGCAATACATTTCCTAATCACAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATCGAGTCTGTTATGCCAGAAGATGCCCTGGTTGGAGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCTCCACTTTAGTAGAGCTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGCGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACGTCATCTGCCCTTGGTCTGTGGTTAGTGAAGTTAGATGTCATGATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAGAAAGCAGGGAACCAGTCAACATGGTACTTGGCGATAG 3234 0.4109 MEDYDTRRDNGGNGVVVAPCTCSHDEFRARGGGKGLSRVVAAAARNGSSASKYDMAVSRNVQKKHKRKGLQELFTADYIVNRVLRKDGPPLGQEFDVLPSGPKYFTSACQEDQGSSKRRKGSKSAIQSLADCNMKAPAKKHGIGKGLMTVWRATNPDAGDLPIGFGVDGQEVPLLSDSIGQKPIHENKRSRKTVNRNAMPKNKMQNKRNKLQEKRKISMQRVGELNLYETQHQSPNEKCGLALDNAISEEGVDRVSMLIDDEELELRELQEGTDLFRCSNHLAASGMLVCSLCKDALVKFPPDSVKMKKPIHLPPWDSSPEIVKKLFKVFHFIYTYAIIVGICPFTLDELVQAFHDKDSMLLGKIHVALLKLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNIGCKVVDLAKSMQIVELNLAGSTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESSDMEDSGSVDDELNDTDTCSSADDYEYDSINSSIRKLKRVNSHKNNILKMYTEIDESRPGEAWLLGLMESEYSNLNIEEKLNALAALTDLVSSGSSIRMKDLSKVTADCNSSIQLRGSGAKIKRSVVKKPGQLLNHKIHLNSDPCTVDSSALFSRFHSYEASFQKGKGSSISHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTNEALCALMSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSTGMSSVSHSDQSELDMVTDDSNSPASDVDNLNMTETAKDSVSSAGAVVIEAGKKVEDQIKKWIRVQEYDSWIWNFFYSDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCRDKEDSNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDGVVEEIIASFASMPHTSSALGLWLVKLDVMIAPYLDRVHPLRKQGTSQHGTWR* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03711 1077 MobiDBLite consensus disorder prediction 183 211 - -
Lapu3g03711 1077 MobiDBLite consensus disorder prediction 534 554 - -
Lapu3g03711 1077 Pfam DDT domain 323 376 IPR018501 -
Lapu3g03711 1077 SMART testlast3 320 379 IPR018501 -
Lapu3g03711 1077 PANTHER HOMEOBOX PROTEIN SIX 218 1060 - -
Lapu3g03711 1077 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 599 637 IPR028942 -
Lapu3g03711 1077 ProSiteProfiles DDT domain profile. 320 379 IPR018501 -
Lapu3g03711 1077 Coils Coil 201 221 - -
Lapu3g03711 1077 MobiDBLite consensus disorder prediction 803 831 - -
Lapu3g03711 1077 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 715 788 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03711 Lapu-Chr3 60557188 60566994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03711 241 1055 Homeobox Transcription Factor Family AT1G28420 26.566 3.16e-72 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lapu3g03711 WSD 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03711 - - gmx:100792062 1831.99