Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03703 ATGGGGATTTGCTTCAGCATTGAAGACGGGAATCATCTCTCCGTCTCCGATTCCAACGCCAAGCCTAAGCCTCCAGCGCCTGAAATGGGATCAGTAGGTCATGAATCTGCCGCTCCAATTGCTTCCATGAACATTAAAGATCTCCGTGAAGGTGCTGGATACAGCAATGTGGATAGTTTCACGTACGATGAACTGAGGCTCGCGACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTCGTATATAAAGGCATCATAGACCATAGTGTGAGGTCGGGTTATAAGGCCACTGAGGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGATAGGGAATGGCTCACGGAAGTTAACTATTTAGGCCAATTCAGTCACCCTAATCTAGTGAAGCTCATTGGATATTGCTGTGAGGATGAACACCGCTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGGCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGACGCGGAATTCAATGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGACCAAACTCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGAAGGGCATTAGACAAGAGCAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGTCCGCTTCTAAATCATAATAAGAAACTTTTGAAAATTTTAGACCCAAAACTAGAGGGACAATATTCAAGTAAAACTGCATTAAAGGTGGCCCATTTAGCGTACCAATGTCTTAGCCAAAACCCGAAAGGCAGACCACTAATGAGCCAGGTTGTTGAAATGCTCGAAAACTTTCAGTCAAGGGGGGAAAATGGGGAAGATCAAATGCTTCAAACTGGTGGCAGCAGTATAACCCTTTATGAGGTTCCCAAGGGCAGCAATGATACTCCAACTCAAGGC 1161 0.4591 MGICFSIEDGNHLSVSDSNAKPKPPAPEMGSVGHESAAPIASMNIKDLREGAGYSNVDSFTYDELRLATKHFRPDFILGEGGFGVVYKGIIDHSVRSGYKATEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDAEFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEMLENFQSRGENGEDQMLQTGGSSITLYEVPKGSNDTPTQG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03703 387 CDD STKc_IRAK 78 352 - -
Lapu3g03703 387 FunFam Serine/threonine-protein kinase BIK1 40 154 - -
Lapu3g03703 387 FunFam Probable serine/threonine-protein kinase PBL8 155 367 - -
Lapu3g03703 387 ProSitePatterns Protein kinases ATP-binding region signature. 78 107 IPR017441 GO:0005524
Lapu3g03703 387 Pfam Protein tyrosine and serine/threonine kinase 78 349 IPR001245 GO:0004672|GO:0006468
Lapu3g03703 387 SUPERFAMILY Protein kinase-like (PK-like) 55 350 IPR011009 -
Lapu3g03703 387 MobiDBLite consensus disorder prediction 14 34 - -
Lapu3g03703 387 Gene3D Phosphorylase Kinase; domain 1 47 154 - -
Lapu3g03703 387 MobiDBLite consensus disorder prediction 357 387 - -
Lapu3g03703 387 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03703 387 PANTHER OS01G0588500 PROTEIN-RELATED 52 353 - -
Lapu3g03703 387 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Lapu3g03703 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03703 Lapu-Chr3 60491547 60496017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03703 59 349 Glycoside Hydrolase AT3G07070 52.041 5.73e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g03703 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03703 - - gmx:100800465 729.169