Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03681 ATGGGTGTGCCACAAACTCCAACCCCCTCTCCACATTTGTATCCACAAGAACTTCAGCTTAAACTTTACCAAGCCTTCATCTTCTCAATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACCTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCTTCTCTCCACATACTTCCCACCACTGCTAATCCTCAAACTTCTTATCCTTACCCTTCACATCCTTGCCGATTAGATCTGACAGTGCAATTTCTTGACAAACTTCCAAGAATTTTATTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAGCTGCTACAAATTCCTTATTGCAAGCATGTGTTTCATATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACATGTCCACTTTGTAGATGCTGCATCATTCCCTCAACCAAGTTCCTTAATCCAGCGCCACCTATTGTATCAGACCCACCACAGCAAGGTGGAATTTCAGGCTCTTCATCACACATCATGTCAATGCCTCAGCATCAAGAAGATGAAGTTGGTAATTCCACAAATTAA 597 0.4188 MGVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPSLHILPTTANPQTSYPYPSHPCRLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCIIPSTKFLNPAPPIVSDPPQQGGISGSSSHIMSMPQHQEDEVGNSTN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03681 198 MobiDBLite consensus disorder prediction 171 198 - -
Lapu3g03681 198 SUPERFAMILY RING/U-box 85 158 - -
Lapu3g03681 198 MobiDBLite consensus disorder prediction 169 198 - -
Lapu3g03681 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Lapu3g03681 198 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
Lapu3g03681 198 SMART ring_2 107 148 IPR001841 -
Lapu3g03681 198 CDD RING-H2_EL5-like 107 149 - -
Lapu3g03681 198 PANTHER RING-H2 FINGER PROTEIN ATL16 14 190 IPR044600 GO:0016567|GO:0016740
Lapu3g03681 198 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lapu3g03681 198 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03681 Lapu-Chr3 60258655 60260959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03681 3 195 C3H Transcription Factor Family AT4G10150 36.408 1.03e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03681 K19039 - pvu:PHAVU_002G300500g 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03681 3 60258655 60260959 Lapu3g03681 3 60258655 60260959 ECH