Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03673 ATGGAGGCGGATTTCGTGACGAATGATATGCTCACACTCACGCATGATGCTTTTGATGCCAACGATCATGACGATGTTCCTATTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAGCAAAGTTGATGATGATTCACTCCTCAGAGATGATGATGACTGGTCCGTTGAAGGGAAGAATAACACACTGTCATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGATTGCAAGGTTCGAAATGGGTTGGGTACTATTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACTGAGAGTACGTCAGACAGTACATGGTTATGCCCCAGATGTGTAGTAGATGATGCTTCTAAGGGAACATCTAATTCAATGGAGAGGACAACAGTAGAATGTAATACAGACAATAGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCCGGAAAAGTGTCTGTTTCTGTTGCTGATGCAGGAGAAACAGCTGTTGTTGTCTCGATGGTTGACAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGATGTTGGTGGGGATCCAATGGCTGAATCATGTATTTTAATGTCAGACACAAATAATCAGCAAAACAGCGAAGTGAAGACAAATTCATTACCGTTCATGGAGGAAGAACTGGAATTGTCTTTATCTAACAATTTATCCTGTAGCCTAACTTGTATGTCCTTAGTGCATAATGATTTAAAGAAAAGTGCCAGTGAAGCAATGAATGAACCTGGTGGCTTTGATGGAACCAAGTCATTTGATGAATCCCATACCAAAACTAGTCCATCCAGAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCCTTTTTATCTGTTGATAATGCAGACAAGAGTGAACCAAAAGATCAAGCAACTGGTGTCCCATGCTTGACTTCAGAACAATGTTTTTTGAAAGGAGATGAAATTGAAGTCGGTGCTTGTAACGCTAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGAGCAAGTTCATATAAAGGCTGAGGAGGGAGATGCCAAGCCTGAAATTCATGATGAGGTTGTGCCAAAGAAAATTAAAGCTACTGATAGCCAGATGAACAATAATGATAAAGCCAATGATGATCTTTTAGAAAATGCTCCGAAACACCCTGCTTTAAAAGATTCTCCTACAAAGGCAACTGTCACATCAGATATAATGAATATAGTTAAAGGGACAGACCGAAGGCTTTCCAAGGGACATACTGGCACTAATGCTTGTGACCAGTCATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATGGAGAATCGTCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCTTCTATAAACTTTGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGACCTAAAACTGACCTTGTAAACAAGTTAACCCCTGCAGCCATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAACGGGCATGGGATAGGGACTGTGAAATCGAGTTCTGGAAATATCGTTGCATGCGAGCTACAAAACCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAAACCAAGAATCCTATACTTTCCAGACTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTGTCTGTGCTTAAAAGTGTTGCTAAATCTGAGCAAACTAAACTAAACAACCCATCAGATAAAGTACCAAATCTATCCGTTGATAACAATATTATTAAAGCAACAGATGTAAACAATCTCTTATCTAAGATCAGTTTTGTTTCATCTGAAAAAAAAGTAGACAAGAAGATTGTACATGGCACAGTTGGTGATAATTCAACTTCTGATAAATTACGTTTAAACAATCACTCAGAAAGGACACCAGTCTCGTCAGCTGGTACTAAAACTAGCACAAAGGAGTTAGGCCCTAAATCTGGTAGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCTACAACCAGCGGAAACACGGCAAATGGAAATCAGGAAGACAACGCAATTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAATTGATATGAGACCAGCATTGGCACCTTCTCGCCACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTATCGCCTGACAGAGCGCTTATTGAGGAACACAAATTTGTCTGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCTATTAATATTGAAAAAGCGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTGAACCTATGTTCACAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAATTCCACCAGCCTCATCAGTAATGCTTACTGATCAACAATCGGAACTAAATACCGATGATCTTTCAGCTGACCCTGCAGTTGAAACAGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCGCCTAGCAGTCCACATGAGAATAGAGAAACATGTAACGGTGACATGTCGGGACCTGATAATATACTTGAACTGGATTCGTATCCTGATCTGGATATTTATGGTGATTTTGAGTACGATTTAGAAGATGAAGATTATATTGGTGCTAGTGTCACGAAGGTTTCAAACCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAAGTTGTTTTCTCCACTGTGGACTTGAAAAAGTCAGATATTGCATTGGATTGTGCTGAGTGTGAGGGGTCTGAAAGGAATGAAGTGCCAGGAGAGGCATCCTGCTCACCAAATTGTCACAATGATGCAGTTCATAGGGATAGGGCTTCTGTTTCTTCTGAGCTCCTACCCTTTGAGAATGCTGTTGAGCCACTTGAGTCAGAATTCGAAGAATTATTATATGGCCCAGACAAAGAACCACTCATAAAAAAATTTCCAGCCGGCGAATTAAGATCGTTACATGGAGATGGCAAGACAGAAACTCTAGGCGTGGCCAATGACTACCATAATGATGAACAACATGCTTTGGATAATGCAGTAAAAGTTTCAGGAGAGGGGAATGAGAATCTCACAGAAAAAGTTTCTGATACTATCATCACCGACCAATCTTCTAATATATCCGAGGCCGGTGAAAGTTTCCAACGGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGACTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTCTGCAAGAGTGGTGTAATCACGGCAGACCAATACAGGTGGGCTGTTGCAAAAACGACTGAGAAGGTCATGAAGTATCACTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3852 0.4026 MEADFVTNDMLTLTHDAFDANDHDDVPIEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNSKVDDDSLLRDDDDWSVEGKNNTLSFPSYYIDENAVICLDGDDCKVRNGLGTIEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSDSTWLCPRCVVDDASKGTSNSMERTTVECNTDNSNSECHAEDSFSGKVSVSVADAGETAVVVSMVDRTKWVPATSEKSLLPFDVGGDPMAESCILMSDTNNQQNSEVKTNSLPFMEEELELSLSNNLSCSLTCMSLVHNDLKKSASEAMNEPGGFDGTKSFDESHTKTSPSRIESDMGLHLGLSVGSFLSVDNADKSEPKDQATGVPCLTSEQCFLKGDEIEVGACNARVAGGKRKHADYSNEQVHIKAEEGDAKPEIHDEVVPKKIKATDSQMNNNDKANDDLLENAPKHPALKDSPTKATVTSDIMNIVKGTDRRLSKGHTGTNACDQSSENKGNMAGLRVKKIMKRNSEDGESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTDLVNKLTPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDSPESKQASECQTKNPILSRLYLADTSVFPRKEDVKPLSVLKSVAKSEQTKLNNPSDKVPNLSVDNNIIKATDVNNLLSKISFVSSEKKVDKKIVHGTVGDNSTSDKLRLNNHSERTPVSSAGTKTSTKELGPKSGSMKNDKRKWALEVLARKTATTSGNTANGNQEDNAIFKGNYPLLAQLPIDMRPALAPSRHNKIPISVRQTQLYRLTERLLRNTNLSVIRRTGITELAVADAINIEKAVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTIPPASSVMLTDQQSELNTDDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMSGPDNILELDSYPDLDIYGDFEYDLEDEDYIGASVTKVSNPKQEQNESKVKVVFSTVDLKKSDIALDCAECEGSERNEVPGEASCSPNCHNDAVHRDRASVSSELLPFENAVEPLESEFEELLYGPDKEPLIKKFPAGELRSLHGDGKTETLGVANDYHNDEQHALDNAVKVSGEGNENLTEKVSDTIITDQSSNISEAGESFQRKEEKSDVTAKQTDSVNHITKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03673 1283 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Lapu3g03673 1283 SMART ring_2 33 71 IPR001841 -
Lapu3g03673 1283 SMART ring_2 124 183 IPR001841 -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 965 988 - -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 494 509 - -
Lapu3g03673 1283 Pfam PHD-finger 147 184 IPR019787 -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 319 350 - -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 966 985 - -
Lapu3g03673 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 190 IPR013083 -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 445 475 - -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 768 788 - -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 487 509 - -
Lapu3g03673 1283 PANTHER RING FINGER PROTEIN 41, 151 115 1273 - -
Lapu3g03673 1283 Pfam Ring finger domain 32 72 IPR001841 -
Lapu3g03673 1283 Coils Coil 534 554 - -
Lapu3g03673 1283 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Lapu3g03673 1283 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Lapu3g03673 1283 MobiDBLite consensus disorder prediction 752 793 - -
Lapu3g03673 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Lapu3g03673 1283 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Lapu3g03673 1283 SUPERFAMILY RING/U-box 27 78 - -
Lapu3g03673 1283 SMART PHD_3 132 184 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03673 33 91 C3H Transcription Factor Family AT3G58030 37.705 5.19e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu3g03673 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03673 - - gmx:100808102 2097.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03673 3 60189121 60205228 Lapu3g03673 3 60189121 60205228 ECH