Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03664 ATGGCTACCTCAACCATATTATGTGCTTTCTGTCTCATCCTTTTCCATCTCCAAACCACAAGAGGGAATAGCAACCAACAGGTTAATTGCAACACCTTGAGATGCGGCCACATAGACATTCAGTTTCCTTTCGGTTTGAAAGGATCCAACCAAGATCGTCGCTGCAGGTATTTCCCAGTTCCAAATTTCCAACTTTCATGCATCGATCGCACACAGACAATTATAAACCTCCCAGGTTTCGGGAACTTAGAGGTGAAAAACATCGATTACGGGTCCCAAAGCATCCAAGTCAACGACCCCAATGGCTGTCTTCCAAAACGGTTCTTACACGGCTGGAACCTTTCGGATTCACCTTTTATTTTGAACCCCGTGATTTATGGATCACTTCCCTATAACCTCACTTTCATGCGTTGCCCCTCCAACGTCACGGACTCCCCTCGATTCCCGTTAGTGCCAATTTCGTGCCTAAGCGACAACGGAAACTATTCGGTCATAGCTTCGTGGTCACAACCTATTGTGTCGTCAACGATGATGTCGGAACGCTGCGACGTAATGTCTCATGCTCTTGTTCCTCTCCCAGTTTTGGACACGCCCATGTGGCCCTTCTGGCCCGACCTCAACACCGACCTTGAATTGGTGTGGACAGAACCAAGGTGCAGCGATTGTGCACTCAGTGGTCAACTTTGTGGGTTCTCCAATCAGAAAAATAAAAGTCTTCGAGTTGGTTGCTTTCCTGGGGACTCCAGCAAAGGTCTTTCAAGGAGTGCAAAATATGGGTTAACGATTGGAGTGGGAATACCAGGACTGTTATGCGTAATCGGGATTTCTTGCTTTATCTGCGGTAAGTTTAGGATGCTAAGCCATCGTCAACGTAGCACAGATCATCCCTTCACAATTTCCCTGGAGCCGGTTCCTTTTGTAACGGGTCTTGACGGCGCCACCATCGAAAAGTATCCCAAAACTCTCATCGGAGAGAGTGGTCGGTTATTGAAGGCCAGTGACAACACCTGCGCAATTTGCCTCTCTGAATATGAACCCAAAGAGACACTGAGGAGCATACCCGAATGTGACCATTATTTTCATGCAGATTGCATAGACGAGTGGCTCAAGTTGAATGCCACCTGCCCTCTCTGCAGGAATTCCCCCGAGGCCTCCACACCTTCCTTCTCTTCCTTTTCTCCCACTTCCTCACTCTCATCTCCACAACCACAATAA 1215 0.479 MATSTILCAFCLILFHLQTTRGNSNQQVNCNTLRCGHIDIQFPFGLKGSNQDRRCRYFPVPNFQLSCIDRTQTIINLPGFGNLEVKNIDYGSQSIQVNDPNGCLPKRFLHGWNLSDSPFILNPVIYGSLPYNLTFMRCPSNVTDSPRFPLVPISCLSDNGNYSVIASWSQPIVSSTMMSERCDVMSHALVPLPVLDTPMWPFWPDLNTDLELVWTEPRCSDCALSGQLCGFSNQKNKSLRVGCFPGDSSKGLSRSAKYGLTIGVGIPGLLCVIGISCFICGKFRMLSHRQRSTDHPFTISLEPVPFVTGLDGATIEKYPKTLIGESGRLLKASDNTCAICLSEYEPKETLRSIPECDHYFHADCIDEWLKLNATCPLCRNSPEASTPSFSSFSPTSSLSSPQPQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03664 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 384 IPR013083 -
Lapu3g03664 404 SUPERFAMILY RING/U-box 330 382 - -
Lapu3g03664 404 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Lapu3g03664 404 MobiDBLite consensus disorder prediction 384 404 - -
Lapu3g03664 404 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Lapu3g03664 404 CDD RING-H2_EL5-like 337 379 - -
Lapu3g03664 404 Pfam Ring finger domain 335 379 IPR001841 -
Lapu3g03664 404 SMART ring_2 337 378 IPR001841 -
Lapu3g03664 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 382 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03664 Lapu-Chr3 60110139 60112759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03664 29 382 C3H Transcription Factor Family AT2G46495 37.017 4.44e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03664 - - gmx:100810240 618.616