Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03652 ATGGGTGACGTAGTTGTTGAAGTTGCCACAAAGAGGGGGAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCTATCGACGAACGAGGCCAACATCATCGCCGGGAAGGTTTCTGAGTCCTCAGCGACACCAATTTCACCCTCGTCGAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTCGAGATGCAGGAAATGCTGCAGCAGATGCGCCTGGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGCCAAAGACGAGGCTCTTAAGCAAAAGGACGAGGAGCTCGAAAACCGTGGCCGTGAACAAGAGAAGCTTCAAGTTGAGCTGAAAAAACTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGATGAAAGATAATGAAACAAAAAAGGACAAGAAGAAGAAGGGGGGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACGTTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAACGAACCCGGAAGCAGAATTTAAGGAAATTTCTAACATGTTGGGGGCTAAATGGAAGACTGTTAGTGCAGAGGAGAAGAAGCCTTATGAGGAGAAGTACCATACTGAGAAAGAATCTTATTTGCAAGTGGTTGCAAAGGAAAAACGTGAGAGTGAGGCAATGAGATTGTTTGAAGAGGAGCAGAAACAGAGGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGGGGCAGAAAAAGAGACCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCTGCTTATTTCTTGTTCACTAACGATAGGCGAACAGCTCTTCTTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAGGAACAAAGGAGACCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGCTTTAGAAATGGAGGCTTATAAGCAGAAGAAAGATGAGGAGGCTGCCCACCTCATGAAGGAGGAGGAGGAACATATGAAACTTCAGAAACAAGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGATAATATAATCAAGAAAACAAAACAGAATCGTCAGAAGAAGAAACAAAACAAGGAAGACAAGAATACTGATCCAAACAGGCCCAAGAGGCCTCCATCATCGTTCATCCTATTCTGCAAAGAAGCAAGGAAAACTTTACAGGAGGAAAGACCAGGAGTCAACACCTCAACCCTTAATGCACTTGTCTCATTGAAGTGGAAGGAACTGAGTGAGGAAGATAGGCAATTCTGGAATGGCCAAGCATCTCATGCAATGGACGCGTACAAGAAGGAAATGGAGGAATACAACAAATCTCTTGCTGCAATTGCAAACCAGGAGCAGAAAACCGAATAA 1422 0.4416 MGDVVVEVATKRGRGRRALKEKTLSTNEANIIAGKVSESSATPISPSSKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKAKDEALKQKDEELENRGREQEKLQVELKKLQKLKEFKPTMNLPVMKDNETKKDKKKKGGSEKKRPSPPYVLWMKDQWNEIKKTNPEAEFKEISNMLGAKWKTVSAEEKKPYEEKYHTEKESYLQVVAKEKRESEAMRLFEEEQKQRTAMELLEQYMQFKQGAEKETKKNKKEKDPLKPKHPMSAYFLFTNDRRTALLAENKNFLEVPKITAEEWKNMTEEQRRPYEEMAKKNKEKYALEMEAYKQKKDEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTDNIIKKTKQNRQKKKQNKEDKNTDPNRPKRPPSSFILFCKEARKTLQEERPGVNTSTLNALVSLKWKELSEEDRQFWNGQASHAMDAYKKEMEEYNKSLAAIANQEQKTE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03652 473 MobiDBLite consensus disorder prediction 85 106 - -
Lapu3g03652 473 Coils Coil 448 471 - -
Lapu3g03652 473 Gene3D High mobility group box domain 372 472 IPR036910 -
Lapu3g03652 473 Gene3D High mobility group box domain 130 235 IPR036910 -
Lapu3g03652 473 Gene3D High mobility group box domain 245 342 IPR036910 -
Lapu3g03652 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 4 468 IPR044601 GO:0003677
Lapu3g03652 473 MobiDBLite consensus disorder prediction 243 265 - -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 30 52 - -
Lapu3g03652 473 SUPERFAMILY HMG-box 385 463 IPR036910 -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 130 147 - -
Lapu3g03652 473 CDD HMG-box_AtHMGB6-like_rpt1 148 214 - -
Lapu3g03652 473 SMART hmgende2 145 215 IPR009071 -
Lapu3g03652 473 SMART hmgende2 390 460 IPR009071 -
Lapu3g03652 473 SMART hmgende2 261 329 IPR009071 -
Lapu3g03652 473 Coils Coil 55 117 - -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 342 398 - -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 244 263 - -
Lapu3g03652 473 Pfam HMG (high mobility group) box 262 328 IPR009071 -
Lapu3g03652 473 Pfam HMG (high mobility group) box 147 208 IPR009071 -
Lapu3g03652 473 Pfam HMG (high mobility group) box 391 459 IPR009071 -
Lapu3g03652 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 391 459 IPR009071 -
Lapu3g03652 473 Coils Coil 310 387 - -
Lapu3g03652 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 328 IPR009071 -
Lapu3g03652 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 146 214 IPR009071 -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 342 390 - -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 30 60 - -
Lapu3g03652 473 SUPERFAMILY HMG-box 249 334 IPR036910 -
Lapu3g03652 473 MobiDBLite consensus disorder prediction 121 153 - -
Lapu3g03652 473 SUPERFAMILY HMG-box 133 209 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lapu3g03652 HMG_box 1.3e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03652 K09273 - gmx:100783033 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03652 3 59975500 59978316 Lapu3g03652 3 59975500 59978316 ECH