Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03642 ATGGCTTCATCTACCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCCTGGAAAAACACACCCTTTCCAACAACCATCACTATCCCAAACTCGTGCGAATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGAGGACCAGCCCTCCGTGTCATCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCGGCGTTAAAGTTGTTTCCAGGAAAAGAAGGGTGAAGTCTGGCGGCGCTCAGGCTATCCGGCGACGTACGGGGACAAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGTAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGTGTGCGGCTGTGGCTGGGCACCTACGACACCGCTGAGGAAGCCGCCATTGTGTACGACAACGCAGCCATTCAGCTACGTGGCGCCGACGCGCTCACCAACTTCATAACGCCGCCAGCGGAGGGCAGAAAAAGCGGTTACTGTTCCGGTGAGGAGTCTCGCAACGACGAGTTGCGTTCCCCCACTTCGGTTCTTAGGTGCTGTTGGGCGTCGGAGGAAGTTGAATCAGTAACCGCAAACGACGTGGTTGGTCCCCCGAGCGAATACGAACATTCATATTCATGCGTTTCGGAGAATAGTAAGTTGAAAGATGAGTCAGTGTTTGGTGTTCCTAACGATGTGGTATTTGGGTTTGAAAGCACGTTGGATATGTTTGACGAGTGTGTTAATAACGTTGCAGAGAGCAGTGGTACATTGTTGGGCGATGAATTTGATTTGAGTGGATGGTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGGTTTGGGTTTGGGTTTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 945 0.5302 MASSTIKQTQHLNRTKLLLEKHTLSNNHHYPKLVRIRVTDADATDSSSDEDQPSVSSTRRRVKSFVNEITIHGAGVKVVSRKRRVKSGGAQAIRRRTGTRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEGRKSGYCSGEESRNDELRSPTSVLRCCWASEEVESVTANDVVGPPSEYEHSYSCVSENSKLKDESVFGVPNDVVFGFESTLDMFDECVNNVAESSGTLLGDEFDLSGWFVSEKENLDLGFGFGFGFTSWQRECDNFQDIGDLFVWDPLVAL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03642 314 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Lapu3g03642 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 198 - -
Lapu3g03642 314 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Lapu3g03642 314 MobiDBLite consensus disorder prediction 40 59 - -
Lapu3g03642 314 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Lapu3g03642 314 FunFam Ethylene-responsive transcription factor 2 100 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03642 Lapu-Chr3 59910741 59911926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03642 1 314 AP2-EREBP Transcription Factor Family AT4G23750 41.127 3.52e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g03642 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03642 - - gmx:100813992 412.149