Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03614 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCTGATATTAGAAGAGGCAGGTTTACGCCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGTGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACAGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCAGTGTCTTCAACCACTATTGCACAAAGTATCGAATACAATTCTTCCCAGTTCAACTACAATTCACATCTACTAGGACACTTTTCTTCCAACCTAGATAATCTACAAACAAAACCACCAGTTCAAGAAACTTTGTTTTCCTCAATATGCCCTCTGTTCATGTTTGACACAACTTCACTAGAAAGCCCAGCAACGGACTGCAACAGTGTGCGAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACATGGAACCTGAGCCACAATGAGGTTAATGCACTTCCTCCTCTCACAGTGACTGTAGGCTTGGACACAACAAATTATTTGCCACCATTAATAGAGAACGTGGACAACATGGTCCCAATTGAGGTACAACCCTGTACAATGGACGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGTTAAATGAATGGGTGGAAACGCAGCAACAATGTCCTAACTTTCTTTTTTGGGATAGTGTTGAAGGACATATTGGTGGGGAAGAACTGGGACCCAATTCGGCAAATGTGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 942 0.4236 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIEYNSSQFNYNSHLLGHFSSNLDNLQTKPPVQETLFSSICPLFMFDTTSLESPATDCNSVRAEHFQDAVGLSTETWNLSHNEVNALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQPCTMDEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGHIGGEELGPNSANVEANTLSPFPSSL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03614 313 CDD SANT 69 112 IPR001005 -
Lapu3g03614 313 FunFam MYB transcription factor 6 66 - -
Lapu3g03614 313 PANTHER MYB DOMAIN PROTEIN 55 1 191 - -
Lapu3g03614 313 MobiDBLite consensus disorder prediction 298 313 - -
Lapu3g03614 313 CDD SANT 17 61 IPR001005 -
Lapu3g03614 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu3g03614 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu3g03614 313 Gene3D - 6 66 - -
Lapu3g03614 313 SMART sant 66 114 IPR001005 -
Lapu3g03614 313 SMART sant 13 63 IPR001005 -
Lapu3g03614 313 Gene3D - 69 137 - -
Lapu3g03614 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu3g03614 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu3g03614 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu3g03614 313 MobiDBLite consensus disorder prediction 293 313 - -
Lapu3g03614 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu3g03614 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu3g03614 313 FunFam Transcription factor MYB26 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03614 Lapu-Chr3 59583106 59585757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03614 1 297 MYB Transcription Factor Family AT1G63910 52.273 1.79e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g03614 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03614 K09422 K02947 gmx:100803556 508.064