Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03609 ATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCAGCTGGGTTGTTCTACTCGGATGTGTCATCAAACAACCCAACTCTTCAACCCCATCTTATGAACCACATCCAAGGCTTTGTGACTGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCCACACAGTGAAAGCAACGGGGCCATGTGGAAAAGTTTCTTCGGCAAACCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACGATGAACGAGTCTTCTTGCAATTTTTATAACCAGCATGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGTAGCGAAAACTTAATAGTCGGTGGTGCTCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATGGTTGACGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGGCCTAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACTAACCCTTCAAGTATTGGGTTGCAATCTTTTGAGCTAAGACAGACAAACCATCATCAGCACCTTTCTGATTTTGGGCATTTTCTAATCAAGAACTCGAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTAGGAACAAAGGACAACGATGCGCAAAAGCAGAAGCACTCTCAAAAGAACAAGCAGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTAGAGTTCGTGGAATTGCAGAAGAGAAAGACAAGGCTGCTCTCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGGGCAGCCACAGTTTACTCGGCTTTGGCTTTGAGAGCCATGTCCAGACATTTTAGGTGTTTGAAAGATGGAATTATGGAACAGATTCAAGCCACTAGAAAAGCTATGGGAGAGAAAGATCCCGTTGCACCAGGCACAACGAGGGGCGAAACACCAAGGCTTAAAATCATTGACCAATCACTCAGACAGCAAAGGGCCTTTCAACAAATTAGCATGATGGAAACCCATCCTTGGAGACCACAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTTGAGCACTTTCTTCATCCGTACCCAAGCGATGTTGATAAACACATCCTAGCCCGCCAAACTGGTCTCTCCAGAAGTCAGGCACGTGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCGATGGTGGAGGAGATGTACTTAGAAGAAGAGAAGGAGCAACAGAACGACATAGCGTCGTCGGAGGGAGGAGGCACCAATCCCGAGGAGGATCAGAAGCCAACGCAGGCTCGGCTCCTCCGAATTGACTCAGAGAGCGTGTCGTCCATGGTGAGCAACACGGACCACAAAAACGACACCAAGAGCGGCAAAAGCGTCCAAAACGACAACCAAATGAATGATAAAAACAATCCCGGGGACGCGTTCGGGTCGGTGGAGCTTGACTTTTCGTCATACGCGTTCCAGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCGCGGGACCAGATAGAAGAGTGTCAAACAGTTCAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1818 0.4824 MARQLCEDKSKDMASSAGLFYSDVSSNNPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLQPHSESNGAMWKSFFGKPSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFGHFLIKNSKFLVPAQLLLNEFCSLGTKDNDAQKQKHSQKNKQWEEGNNGGGSSKNHSLSSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQATRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQARVSNWFINARVRLWKPMVEEMYLEEEKEQQNDIASSEGGGTNPEEDQKPTQARLLRIDSESVSSMVSNTDHKNDTKSGKSVQNDNQMNDKNNPGDAFGSVELDFSSYAFQGGGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDQIEECQTVQYSLLDGEGQNMPYRNLMGTQLLHDLV* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03609 605 CDD homeodomain 377 440 IPR001356 GO:0003677
Lapu3g03609 605 MobiDBLite consensus disorder prediction 223 252 - -
Lapu3g03609 605 MobiDBLite consensus disorder prediction 448 519 - -
Lapu3g03609 605 ProSiteProfiles 'Homeobox' domain profile. 374 439 IPR001356 GO:0003677
Lapu3g03609 605 SUPERFAMILY Homeodomain-like 378 445 IPR009057 -
Lapu3g03609 605 MobiDBLite consensus disorder prediction 238 252 - -
Lapu3g03609 605 Pfam Associated with HOX 200 324 IPR006563 -
Lapu3g03609 605 SMART prehox3 196 326 IPR006563 -
Lapu3g03609 605 MobiDBLite consensus disorder prediction 502 516 - -
Lapu3g03609 605 Pfam Homeobox KN domain 394 435 IPR008422 GO:0003677|GO:0006355
Lapu3g03609 605 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 473 - -
Lapu3g03609 605 MobiDBLite consensus disorder prediction 456 494 - -
Lapu3g03609 605 SMART HOX_1 377 443 IPR001356 GO:0003677
Lapu3g03609 605 Gene3D - 380 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03609 Lapu-Chr3 59527095 59530749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03609 138 605 Homeobox Transcription Factor Family AT5G41410 49.183 4.22e-140 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03609 - - gmx:100787954 949.118