Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03608 ATGGCAGCGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAGTATCGAGAAACTACAATCTCCGCTTCAGCTTCTCCAAACCACACCCAAACAACCCCTCACCGCCGCACTCCTCAATCCCCTTTATGCTCCCAACCCGAACCCGAACCCGAACCACCTGCATTGCCCGAATCTCCCTCCACCCACAGGATCCGCTTCTCCCCCGGGCGCTTCTCCCCGATAATGGACTTCACCCACTCCTCCCCCACCGCCAACGGCCACCACCCGCCCCAGGCCCAGTCCCAGGCCCACGACGCCTTCCCTTCCAGCTTCTCCAAGTTTAACTCTGCCCTCACTGCGGGCCTCTTGAACCCAATGTCCCCCCCGCCCGACAAGACCCGATCCAGCCCAACGCTCTTCGAAATGATGGCCAGCGAGCCCGATGTCCACCAAAGGCCCACCACCCACATACCTCCCGCCGCCGCCGCCGCCGCTGCGTCCTCACTCCACAAACCCCAAATTCTCGATCGCCAAGCCCTCATGATGCAGCGGATTTCGGACCTGTTAGGGTCCCGCAGCCCTGGGAACCAGTTCAACGATGCCGTTTCCAGTGACATCAAGCTCACGCTCAGCTCTAAAGACGGAATCAGTGTCTCCATGAACGTGCATCGCCAAATCCTCGTCGCGCATAGTAGGTTCTTCTCGGTGAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCAGCGCTCGCCGGTTCCCTACGAAGTTGAAATCGCCGATTGCGACGATGTTGAGGTTTACATCGAGACCTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGGGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGGTTTCGGCTGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCACCTTGGGCGGAGGATGAGGAAGAGAAGGTGGCAGCACTCCTGTCTGAGCTTCGTCTTGAAGAGGTTGGAGCTGGGGAGGTTTTGAAGAGGGTTTCAACTGATGCTGCTGCCAATGGAAATGAAGAGGGGAGTGATAATGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTGGAAGGCAAGGATGAGAAGGCCAGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCATGAAAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGTTGTACTTAGCATGTGATGATTGCTTGCAGTTACTTCGTCACCATTTTTTGCAGGCTGCGGCTTCGGACTTGCAGGATGTGAGTCAAATTGCAAGGCAAGCAGACAATTTGCATTGGATTTTGGATATCTTAGTTGACAGACAGATAGCTGAGGATTTCCTGAAGTCATGGGCATCTCAAGCAGATTTAGCTGAAGCTCATTCTAAAGTGCCAGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACAGCAAGGTTGTTTGTTGGGATTGGGAAAGGACAGTTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAAACATGGCTGGTTCCCTTTTATGATGACTTTGGTTGGATGAGGAGGGCATCCAAAGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACGATTCTTACTCTGCCACTCTCCTGGCAACAGGATATTTTGCTTGCTTGGTTTAATCGTTTCTTGAATTCCGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGAGCTTTCTGGAAGAGGAATGGAGAGCAAGAACGGACTAGGCAATTACGAATTACAACTACATCAGTTGAGAACCCTTGA 1839 0.5144 MAATTTTTFLKLQNQPTKPKRRKYRETTISASASPNHTQTTPHRRTPQSPLCSQPEPEPEPPALPESPSTHRIRFSPGRFSPIMDFTHSSPTANGHHPPQAQSQAHDAFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHQRPTTHIPPAAAAAAASSLHKPQILDRQALMMQRISDLLGSRSPGNQFNDAVSSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVAALLSELRLEEVGAGEVLKRVSTDAAANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYLACDDCLQLLRHHFLQAAASDLQDVSQIARQADNLHWILDILVDRQIAEDFLKSWASQADLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03608 612 ProSiteProfiles BTB domain profile. 206 285 IPR000210 GO:0005515
Lapu3g03608 612 MobiDBLite consensus disorder prediction 28 51 - -
Lapu3g03608 612 Gene3D Potassium Channel Kv1.1; Chain A 185 319 IPR011333 -
Lapu3g03608 612 MobiDBLite consensus disorder prediction 1 15 - -
Lapu3g03608 612 MobiDBLite consensus disorder prediction 83 108 - -
Lapu3g03608 612 MobiDBLite consensus disorder prediction 1 108 - -
Lapu3g03608 612 MobiDBLite consensus disorder prediction 52 66 - -
Lapu3g03608 612 Pfam BTB/POZ domain 200 294 IPR000210 GO:0005515
Lapu3g03608 612 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 189 598 IPR038920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03608 Lapu-Chr3 59506197 59508473 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu3g03608 BTB 0.00031 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03608 - - ccaj:109800730 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03608 3 59506197 59508473 Lapu3g03608 3 59506197 59508473 ECH
Lapu3g03608 3 59506197 59508473 Lapu9g01133 9 24819696 24822826 PCT