Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03607 ATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTCCCGAAGCTTCTCCTCCACCTTCTCTCCTTTTTGGGCTTTCTCCGGAGGCTCATTTGCACCCTCCTCCGCTTCATGGGCTTCCACGATTTACTGGAGCCTGACATTGCTTGGCCCGAAGCCCACGCCCAAATGCCCGAATTTGAATCCGTCTCCGCCACGCTTATCCGGGAAATCCTCCCCGTCGTCAAGTTCCGTGACCTCCTCGACCCGCCTGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGGAAAACGATGAGGTCAGACGGCTCGCCAATTGTCGACACATATTCCACCGGGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACGTGCCCTCTCTGCAGAACACCCTTTATACCTGACGATATGCAAGGTACCTTCGTTGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAACTTTACTCAGAACATCCTCTTGTTCCTGCTTCCTAA 495 0.5475 MGFPVGYTELLFPKLLLHLLSFLGFLRRLICTLLRFMGFHDLLEPDIAWPEAHAQMPEFESVSATLIREILPVVKFRDLLDPPETCAVCLTEFEENDEVRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQGTFVERLWAASGISELYSEHPLVPAS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03607 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Lapu3g03607 164 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Lapu3g03607 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 148 - -
Lapu3g03607 164 SUPERFAMILY RING/U-box 67 135 - -
Lapu3g03607 164 SMART ring_2 86 128 IPR001841 -
Lapu3g03607 164 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03607 Lapu-Chr3 59490415 59490909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03607 1 150 C3H Transcription Factor Family AT1G63840 56.774 3.69e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03607 K16281 - gmx:100789020 257.299