Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03603 ATGGGCGGTTGTTGCTGCTGCTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATCAGTATCCAAGAGCGTCAGAGGAGCATGTTCCTCTATCATCTCACCCGGGTGCCGCTTCTGCTTTCTCTGGGAGACTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTACAACTCAAGAAATTCGTAGTGACAAGAATAATGCATCCTTGCATTCTACAAATTCAGATGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGACTGATCTAGAGCTAGATTCTGCCAAGGGTTCTGAAATTGAACTTGCAAAGTCAGGAAAACCTGTAGATTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAGTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 642 0.433 MGGCCCCCSSKETVLSAPPAYYYQYPRASEEHVPLSSHPGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPTTQEIRSDKNNASLHSTNSDAIQEPVSGDNHGTPVKMEELKESECKVQTDLELDSAKGSEIELAKSGKPVDLVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03603 213 MobiDBLite consensus disorder prediction 80 109 - -
Lapu3g03603 213 FunFam Putative E3 ubiquitin-protein ligase RHB1A 139 207 - -
Lapu3g03603 213 Pfam Ring finger domain 160 202 IPR001841 -
Lapu3g03603 213 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lapu3g03603 213 MobiDBLite consensus disorder prediction 80 113 - -
Lapu3g03603 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 208 IPR013083 -
Lapu3g03603 213 CDD RING-H2_AIRP1-like 158 206 - -
Lapu3g03603 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 41 209 - -
Lapu3g03603 213 SUPERFAMILY RING/U-box 156 209 - -
Lapu3g03603 213 SMART ring_2 162 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03603 Lapu-Chr3 59442375 59445598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03603 1 209 C3H Transcription Factor Family AT5G41350 54.717 3.10e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03603 - - gmx:100816369 400.208