Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03602 ATGGAAGAATGGTCAACATTCTCAAATGGGCCTTCTTTAGATTCCCATGGTGTTGAAACTGTTGGTGAATTTCCTGGAAATGGTGGTTGTCTTGGAGAAGACCATGTTGATAATGGTGCTCACCATGGTAAACTTACACAAAAATGCTTGTTCTATCAACTTTTCCCTCTTTATCTGAAGGATAATTGTTCCCAAGGTGGTGCCCGGCCTTTGCTGGTTTTGGTCGATGGACTACAGATCGATTTGTATATACTGTTCTCCCTTGTGAAGGAAAGGGGTGGATATGCTGAGGTGTCAAAAAATGGATTGTGGGGTTCTGTGAGCAAGGAATTGGGTTTGAACATTGAAGTTTACTCACCAGTGAAATTAGTGTACGACAAGTATCTGAATGATTTTGAAAGGTGGCTCAAGAAATTTTTTGAAGAGAAGATTTTAAAAAATGGAAATCATGGGTGTGATTGGGGTTTGAAGTGGTTGCCATTAGATATAGAGAAAGGGTTCAGAGGCCTGTTATATCCAAATCCAAAGAACAAAGCCGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGTTAACCACACGAATGGTAATAATCTATTGGACACCAAAGATCAAAATAGTAAATCTGAGGATGTCCAACACATTGAAGGTGACAATAATGAAAAATCCTGTAATGGAATTATGGACAATCCTTCTACCTTGGGTACAGAATGTGCTGACAAGGAATATAACCCCCGCAAACGCAAACGGGATGCATTATCTGGCATGTTAAACTGGATGAAGCATATTGCAAAACATCCTCTTGATCCTTTAACTCAACCAGTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCAGAACTTTTTTGGGCAATTTCTGAAGGCAAGAAAGGTTCTGTCACTTAGAAAGCATGAAGAACCAAACAATGGATCATCTTTTTTGCAGAAGCAGAAGATGCATCCTGCCATGTATGAGGATCATGTTGCTCTTGGTCACCGAGCTACAGGAAAATCGAGATGCAGTGAAGGACTGCCTTCCTCTGTTAAATCTCGGTCATGCTGTAATCCATGTTCTCACAATGGGGTGGCAGAAAAATGTCCTCATGAGAAAACAACTGAAACATTAGATGTATTGACTTCAAAAACAATGGCTGAATCATCTGGGGACGAGTTTCTTGAAAAGGAAGTATCTGTTGGCCCTCGTTATCAAGCTGAAATCCCTGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGCTGGGCACACGAGTATGGTCTTTGAAACATGGCACAGAACCTGCTAGTGAAACAGATCTTGGAATGGGAAGACAAGAGAAGTGTAGCTGCGAACACCAAGGTTCTGTTGCGTGTGTTAGATTACATATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGAATTTTACCATTGGGGATTTGATCGAATGGGCGAGGAAGTTTCACTTCAATGGACAACTGAAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATATTCCCTCTAAAATTAAATATTTTTGGAACAATGGATTCAAATACTTTCCAAACAAGACAAAAAGAAACTTGGTGAGCTATTACTTCAACGTGTTTCTCATTCAACTAAGAACCTATCAGAATCGGGCAACCCCAAAGAATATTGACAGCGATGATGAAGTAGATTTTGGATATTTGAGCAAAGGTTTTGGGATGGAAGCTGTGAAGGGTCCTGATGATGATTTTCTGGAGTGTTCTCTGAGCGAGCAGTACATTGATTTTGAATAG 1818 0.3949 MEEWSTFSNGPSLDSHGVETVGEFPGNGGCLGEDHVDNGAHHGKLTQKCLFYQLFPLYLKDNCSQGGARPLLVLVDGLQIDLYILFSLVKERGGYAEVSKNGLWGSVSKELGLNIEVYSPVKLVYDKYLNDFERWLKKFFEEKILKNGNHGCDWGLKWLPLDIEKGFRGLLYPNPKNKADDELFKSKSNKKKKNTDLVNHTNGNNLLDTKDQNSKSEDVQHIEGDNNEKSCNGIMDNPSTLGTECADKEYNPRKRKRDALSGMLNWMKHIAKHPLDPLTQPVPKPSKWKEYKGQNFFGQFLKARKVLSLRKHEEPNNGSSFLQKQKMHPAMYEDHVALGHRATGKSRCSEGLPSSVKSRSCCNPCSHNGVAEKCPHEKTTETLDVLTSKTMAESSGDEFLEKEVSVGPRYQAEIPEWTGVVSESDSKWLGTRVWSLKHGTEPASETDLGMGRQEKCSCEHQGSVACVRLHIAENRMKLKLELGSEFYHWGFDRMGEEVSLQWTTEEEKRFKDIMRSNIPSKIKYFWNNGFKYFPNKTKRNLVSYYFNVFLIQLRTYQNRATPKNIDSDDEVDFGYLSKGFGMEAVKGPDDDFLECSLSEQYIDFE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03602 605 ProSiteProfiles ELM2 domain profile. 402 435 IPR000949 -
Lapu3g03602 605 MobiDBLite consensus disorder prediction 181 256 - -
Lapu3g03602 605 SMART ARID_2 42 133 - -
Lapu3g03602 605 Gene3D - 33 147 IPR036431 GO:0003677
Lapu3g03602 605 SUPERFAMILY ARID-like 47 138 IPR036431 GO:0003677
Lapu3g03602 605 SMART bright_3 49 138 IPR001606 GO:0003677
Lapu3g03602 605 MobiDBLite consensus disorder prediction 181 197 - -
Lapu3g03602 605 Pfam ARID/BRIGHT DNA binding domain 58 133 IPR001606 GO:0003677
Lapu3g03602 605 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Lapu3g03602 605 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 43 584 - -
Lapu3g03602 605 SMART ELM2_2 404 460 IPR000949 -
Lapu3g03602 605 MobiDBLite consensus disorder prediction 211 225 - -
Lapu3g03602 605 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03602 Lapu-Chr3 59430126 59437174 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu3g03602 ARID 7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03602 - - gmx:100819320 984.941