LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g03595	ATGCGGTCGTGGTGGGGAAAGTCTTCTTCCAAAGAGGTGGAAAGGAAGGCAAACAGGGAAAGTATTATTCATACCATACAGAGGAAATTCAAGAATGCTTCTGAAGAGAAATACAATAATAAATCTGGAAGATCAAGGAGACATCGTGATGATGCCATCTCCAGGAAGGGATCTAGATCTCTTGCACCTTCAAGATCACCATCACCTTCTACACATGTATCCCGATGTCAAAGTTTTGCAGAAAGGCCTCTTTCTCAACCACTTCCATTACCAGGGTCACATTTTTCAGATGCCATTGATGCAAATTCTGGAGTTATTTTAGCTTCAAAACTTGATAGAACCTTAAAGTCCAAGTCATCTCTATATTTTCCCCTTCCAATACCTGGTTTTGTTTCAAACAAGGAAGATGCTACTTGTATGGAAGGAGATATAGCCACTGCATCTGTTTCTAGTGAAAGCTCAATTGATAGTGGCAACTCATTTGATTCGCCACATCTTGTTAGTCCTCTGGCATCTGATTGTGAAAATGGAAACCGAGCCACCATTAATAGTTCTTTCAGTCTGATGCACAAGAATCAACCTCTTATTACTATCCAAAGAAAGTCAAGAGCATTCTCAAAACCAGCTCCTCAGTTGTGCAGTAATAAGCCATTGCCTACCTCACCAAGAGGGGTTCCTTTACATCTGCAAGTAGCTCGCCCAGGTGGTTTGTGTAGTGTTCCAGATTGTTCAATGTCAAGTCCTAGAAATCCAATGGGAGCATTTGGTCCTGAACAAATGTTGAACTCTGAATTACAGACTAGAAAGCCGTATCCAGATATAGCTTCTGGGCATAGTCTCGTTTCAGGCCGTAATTCTAGTCATAATTCAGTTGGTGGGGATCTTTCAGGACAGATGATTTTGCCGCAAAACAGGTGTAGCGCCGAGTGTTCTCCAATACTTAGTCCCAGAATGACAAGCCCTGGTCGTAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATCCTAAAGCTGGAGGAACTGCAGCAGAAGCACATACAAGACGCCCTGATGATGTTAAACAAAAAAACCACCAGTTACCACTTCCTCCAATAACTGTCACTAAGCCGGGCCCATTTTCTCAAACCTATTCTGCATCAACAACTCCTTCAGCCCCTCGTAGTCCTGCCGGATCAGAAAATTCGATAAGTCCAGGTTCACGCTGGAAAAAAGGACAGTTGCTTGGAAGGGGAACATTTGGTCATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCACAGCAACTTGGCCAAGAAATTGCAATGCTTAGTCGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGGTCGATGACAAACTTTATGTATACTTGGAGTATGTCTCCGGTGGGTCAATCTATAAGCTGGTTAAAGAATATGGCCAGTTAGGTGAAATTGCAATTCGCAATTATACTAGGCAAATTTTGTTAGGACTTGCATATTTGCACGCCAAGAACACTGTTCACAGGGACATTAAAGGAGCAAACATATTGGTGGACCCTAATGGGCGAATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGTGGTCCATCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAAAGGTTGTAATCTTGCGGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTCAAGATTGGGAACAGCAAGGAACTTCCGACAATTCCAGATCACCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGTTTGCAAAGGAATCCTCAAAATCGTCCCTCGGCTGCTCAACTTCTAGAGCATTCATTTGTTAAGAATGCTATGCTGGAAAGATCTATTTTAACTGCCGTTCCTTCAGAAGATCCAACTGCTATAATAAATGCAGTGAGATCTCTGGTCATAGGACCTGCAAAACGTAATTCATGCTTAGACTCAGAAGCGGCTGGGATCTATCCACCTAGAAACTTGAGAGCAGGTTCTGGATCAAGTGATCCTCATACACCAAGGGAGATCTCTTGTCCCATTTCTCCCTCTTTGCCTCATAAATCGTTGCATACAAGTGGAAGGGCGTCTCCTCCAATTTCTAGCCCTCATACTGCATCTGGCTCATCTTCGCCCCTAACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAGCAATCAATACTCTCACATGAAGTTTCGGGTATGACCCATAAGTCCCATAATGGTGTTATTCCAATATGTAGCCCTCGTACTGCGTCTGGCTCATCTTCGCCACTAACCAGTGGCGGTGGTGCGATTCCATTTCATCAGACAAAGCAACAAATATTCTCACATGAAGTTGTGGGTATGATCCAAAAGTCTCTGAATGATGCTATTCCAATGTCTAGCCCTGGTAGTGCATCTGGCTCATCTTCACCACTAACCAGCGGTGGCGGCGCTGTTCCATTTCGTCAGACAAAGCAACCATTATTCTCACACGAAGTTTTGAGTATGATCCAAAAGTCGCAGAATGGTGCTATTCCAATATCTGGCCCTCGTACTGTATCTGGCTCATATTCGCCACTAACCAGCGGTGGCGGTGCTATTCCATTTCATCAGACAAAGCAATCACAAATCTCACATGAAGTTGTTGGTATGATCCAAAAGCCTCAGCATGGTTTTTATTCACATGGAAATACCCCTTATCAGGGTTCCAAGCATGTGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGTCGGGATGTAGGTTCGTCTGACAATAACCGTTCTAGGAGGGCTGTCCAGGGAGACCCAATAGAATTTCGCGATGGGAAGTCATACTTGGCTGATTGCGTGTCACAGCAGCTGTTGAGGGATTATGTACGGCTACATGCATGCCTGGATCTTAAGCCCGATGCCCCAAGCCCTGATCGCACTAATGGCTTATGA	3084	0.4394	MRSWWGKSSSKEVERKANRESIIHTIQRKFKNASEEKYNNKSGRSRRHRDDAISRKGSRSLAPSRSPSPSTHVSRCQSFAERPLSQPLPLPGSHFSDAIDANSGVILASKLDRTLKSKSSLYFPLPIPGFVSNKEDATCMEGDIATASVSSESSIDSGNSFDSPHLVSPLASDCENGNRATINSSFSLMHKNQPLITIQRKSRAFSKPAPQLCSNKPLPTSPRGVPLHLQVARPGGLCSVPDCSMSSPRNPMGAFGPEQMLNSELQTRKPYPDIASGHSLVSGRNSSHNSVGGDLSGQMILPQNRCSAECSPILSPRMTSPGRSSRIQSGTVTPLHPKAGGTAAEAHTRRPDDVKQKNHQLPLPPITVTKPGPFSQTYSASTTPSAPRSPAGSENSISPGSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRESAQQLGQEIAMLSRLRHPNIVQYYGSETVDDKLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSKGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPQNRPSAAQLLEHSFVKNAMLERSILTAVPSEDPTAIINAVRSLVIGPAKRNSCLDSEAAGIYPPRNLRAGSGSSDPHTPREISCPISPSLPHKSLHTSGRASPPISSPHTASGSSSPLTSGGGAIPYHQTKQSILSHEVSGMTHKSHNGVIPICSPRTASGSSSPLTSGGGAIPFHQTKQQIFSHEVVGMIQKSLNDAIPMSSPGSASGSSSPLTSGGGAVPFRQTKQPLFSHEVLSMIQKSQNGAIPISGPRTVSGSYSPLTSGGGAIPFHQTKQSQISHEVVGMIQKPQHGFYSHGNTPYQGSKHVQFGRNLQTTHACRDVGSSDNNRSRRAVQGDPIEFRDGKSYLADCVSQQLLRDYVRLHACLDLKPDAPSPDRTNGL*	1028

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g03595	1027	ProSiteProfiles	Protein kinase domain profile.	403	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g03595	1027	ProSitePatterns	Protein kinases ATP-binding region signature.	409	432	IPR017441	GO:0005524
	Lapu3g03595	1027	Gene3D	Transferase(Phosphotransferase) domain 1	401	683	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	1	78	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	704	770	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	59	78	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	314	404	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	314	332	-	-
	Lapu3g03595	1027	Pfam	Protein kinase domain	404	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	370	402	-	-
	Lapu3g03595	1027	SUPERFAMILY	Protein kinase-like (PK-like)	401	733	IPR011009	-
	Lapu3g03595	1027	SMART	serkin_6	403	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g03595	1027	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	63	691	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	734	770	-	-
	Lapu3g03595	1027	FunFam	Mitogen-activated protein kinase kinase kinase	401	683	-	-
	Lapu3g03595	1027	CDD	STKc_MEKK1_plant	402	659	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	343	357	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	7	56	-	-
	Lapu3g03595	1027	MobiDBLite	consensus disorder prediction	844	866	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g03595	Lapu-Chr3	59330041	59338486	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g03595	4	780	MAP Kinase Kinase Kinase	AT1G63700	60.451	0.0	842

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lapu3g03595		Pkinase	1.2e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g03595	K20717		-	gmx:100814422	1614.74