Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03589 ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCCGGGGTGTTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTGTAGAAATCAGCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAATGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTGGCAAAGGGTCAATCCATTTGGCTGAACAGTGCCCATTCCGCTGATTGTAAAGTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCGTCCATTGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGGGTTATTGAGCTTGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTCATTGAGCGGATCAAAACTTCTTTCTTGAATAATTTGCATGTCAATGTTCCTAATAAATCAGGAACTACATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATCATAATGCTAATAATGTGGAATCAATTCCAGAAATTGGGTATGACATAGCCAACAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCAAATCAACCACTGGATGAAACTTTAATGGTTGAAAGGATAATGAGTGGCACTTCTCGAGTCCAAAGCTGGCAAGTTATGGATGATGAGTTGAGTAACTGTGTCCCTAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTGCTTCTGCACCCAAGTGTAACAATCCTTCAGACCCTTTTGCCCGAGATCTTCAAAAGTGCAACAACCCAAAAACGACGCTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGACCTTTTAAAGACCTCTGATCAGTTACTCGTGAGAATGCCTTCACAAAAGTTTCCTCAGGAATCAAGTTTTGTTAGTTGGAGGACAGGAGGGGCAATGGATTACCAATGGTCGAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGTTTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTTATGTCAGAGAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCGATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCAAAGAGGGGTAACAAATATAGAACCCGGGACTAAAAGATCACCTCAAGATATGGTAGAAAGGACCTCTGATCATTGTTTTAGCAAAAACAACAATGGCAAGAAACCAGGCGTAAAAAAGAGAAAGGTTTGTGGTGTAGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGTAGTTATGTTAATGATGTTACTGTGAGTACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCAAGATCAGGAAGGCTACTAGAAATTATGGAAGCAGTTAATAGTTTCAATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTATTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCCAAGTTCTGA 1890 0.4095 MVPENMKKQLALAVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTVEISPQSKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQSIWLNSAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNLHVNVPNKSGTTLKSRNQEDLAYVAFDHNANNVESIPEIGYDIANKTSPDGSSNAFQANQPLDETLMVERIMSGTSRVQSWQVMDDELSNCVPNSMNSSDCISQTFASPENIASAPKCNNPSDPFARDLQKCNNPKTTLVDPRSDDWHYQRVLSDLLKTSDQLLVRMPSQKFPQESSFVSWRTGGAMDYQWSRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEAQRGVTNIEPGTKRSPQDMVERTSDHCFSKNNNGKKPGVKKRKVCGVDETGKEINSDALKGSYVNDVTVSTSDNEIVIEMKCPSRSGRLLEIMEAVNSFNIDFNSVQSTEADGNLYLTIKSVFTGATIATTKRIKQALQKVASKF* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03589 629 Gene3D - 425 490 IPR036638 GO:0046983
Lapu3g03589 629 ProSiteProfiles ACT domain profile. 561 629 IPR002912 -
Lapu3g03589 629 Coils Coil 466 493 - -
Lapu3g03589 629 PANTHER TRANSCRIPTION FACTOR TT8 2 627 - -
Lapu3g03589 629 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Lapu3g03589 629 MobiDBLite consensus disorder prediction 499 513 - -
Lapu3g03589 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Lapu3g03589 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
Lapu3g03589 629 MobiDBLite consensus disorder prediction 492 525 - -
Lapu3g03589 629 SMART finulus 433 482 IPR011598 GO:0046983
Lapu3g03589 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 429 493 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03589 Lapu-Chr3 59274879 59278722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03589 2 626 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.234 4.97e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03589 bHLH-MYC_N 1.7e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03589 - - gmx:100795524 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03589 3 59274879 59278722 Lapu3g03589 3 59274879 59278722 ECH