Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03580 ATGGATGGGAGAGAGGTTATGGCATTTTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGGGATTGGAGGGTCTGGTTCTGGAACACTTAGTGGGGGAGGAGAGTTCCAAGCAGCCCCTGGGTTCAGACCTTTGTCAAACAGTGGCATTCAAGCTGAGTCAAATTCAAGGGGGCAAGGGGGTGGTTCTGTAGGGTCTAGCCCCACATTTTCCGTGGAGCCTCCTCAGGGTCGTGCCAATTTTAACCATGGCATTGGCATTAGCATTGGGGCACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGACCTCGTAAATATGGTCCTGATGGAACAGTTTCTTTGAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCTGGGTGAAAGTGCAACCACCCTATTTCGGAAAAAGGGGAGAGGGCGGCCACCTGGATCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACCATTGGAGTTGGGGAGGATATTGTGGCAAAGTTATTGTTGTTGTCGCAGCAGAGACCAAGGGCTCTTTGCATTTTGTCAGGCACTGGGACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACAAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTAGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGCCCTGATGGTCTTGTTATTGGCGGTGGTGTTGCTGTGCTTATTGCAGGAAGTCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGTGGCTCAAAGACCAAGCCTAAACAAGGGCTCACTATCACGGATGAAAGTTCTGAGCAGCCTCAGCATAATGACAAGATGGCTTCTCCAGCCAGTGCTCCACCTGGTCAGAATCAAAACTACCTCCCTTCTGGCACACACATTTGGCCTGGATCTCAACCAGCAGAGCTGAAAGGCACTCAAACCCATACTGGCATTGACTTGACTCGTGGGTGA 1074 0.4944 MDGREVMAFSGGSASYYMHRGGIGGSGSGTLSGGGEFQAAPGFRPLSNSGIQAESNSRGQGGGSVGSSPTFSVEPPQGRANFNHGIGISIGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTLGESATTLFRKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCILSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGLVIGGGVAVLIAGSPVQVVLCSFVYGGGSKTKPKQGLTITDESSEQPQHNDKMASPASAPPGQNQNYLPSGTHIWPGSQPAELKGTQTHTGIDLTRG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03580 357 MobiDBLite consensus disorder prediction 293 333 - -
Lapu3g03580 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 320 IPR039605 GO:0003680
Lapu3g03580 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Lapu3g03580 357 MobiDBLite consensus disorder prediction 291 357 - -
Lapu3g03580 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 285 - -
Lapu3g03580 357 MobiDBLite consensus disorder prediction 48 77 - -
Lapu3g03580 357 MobiDBLite consensus disorder prediction 29 128 - -
Lapu3g03580 357 MobiDBLite consensus disorder prediction 341 357 - -
Lapu3g03580 357 ProSiteProfiles PPC domain profile profile. 163 303 IPR005175 -
Lapu3g03580 357 CDD DUF296 171 283 IPR005175 -
Lapu3g03580 357 Gene3D - 171 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03580 Lapu-Chr3 59184172 59189245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03580 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.579 1.22e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03580 - - gmx:100813888 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03580 3 59184172 59189245 Lapu3g03580 3 59184172 59189245 ECH