Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03575 ATGACTTGTTCGGCCTGTGCTGCTTCTGTCGAAAAAGCTGTCAAACGTCTTCCTGGCATTCGCCAAGCTGTTGTCGATGTTCTCAACAATCGTGCTCAAATCCTCTTCTACCCCTCCTTTGTTAATGAAGAGACCATTCGCGAGGCCATTGAAGATGCTGGATTCCAAGCCACATTAATCAGAGATGATAACGAAACATCTGTTCAGATATGCCGCATACGTATCCAAGGCATGACATGCACGTCGTGTTCCTCCACTGTTGAATCTGCACTTCAATCAATCCAAGGAGTGGTGAAAGCCCAAGTGGCTCTTGCAACCGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGCTGTAGAAGACACTGGTTTTCAAGCCACGCTTATCAGCACCGGTGAAGACATGAGCAGAATAGACCTTCAGGTTGAGGGCATAAGGACTGGTCGTTCCATGAGACTAATTGAAAATTCTCTTCAAGCCCTCCCTGGGGTTCAAGGTGTAGAAACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTGACAGGACCAAGAAATTTCATTAACGTGATTGAAGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCTCAAGAAGGAGGGAGAAGGAATAGTCATAGGAGGGAGGAAATCAAGCAATACTATAGATCCTTCTTGTGGAGTTTGGTGTTTACTGTTCCTGTGTTTCTTACCTCCATGGTGCTTATGTATATCCCTGGAATTAAGCATGGACTAGATGCCAAAGTTGTTAACATGCTTACAGTGGGGGAGATTATAAGATGGGTGCTTGCTACACCGGTGCAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAATGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTCATGGTTTCAAGGGCACTGATTTCTTTGAGACCAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACTTTGGACAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGACAGCAGATTGATTCAGAAGAATGATGTCATTAAGATCATTCCTGGTGCAAAAGTGGCTTGTGATGGATTTGTAATTTGGGGTCAGAGCCACGTGAACGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACCGTGAATGAAAATGGAGTGTTGCATATTAAGGCTACATGGGTGGGATCAGAGAGTGCGCTTGCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTCTGGTTATTTTAATCTCATTTTCAACTTGGCTTGCCTGGTTTATAGCTGGAAGAGTTCGTGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTCAGCTTGCTTTGCAGTTCGGGATTTCTGTCATGGTAATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCAACTGCAGTCATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTCGTAAATACAAAGTTGTTAACAAATATGGTACTCCGGGAATTGTATGAACTTGTGGCTGCAGCTGAGGTGAACAGTGAGCATCCACTGGCGAAGGCCATTGTAGAGTATGCTAAAAGACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGCACGGGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAATAAGGAAATACTTGTGGGTAACAAGACCTTGATGGTGGACCACAATGTTGCACTTCCTATTGATGCTGAAGAGATACTGGCAGAAGCAGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATAAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATCTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCTGAGCAGAAGGCTGAGCAAGTGAAAGCCTTGCAGGCTTCTGGGCACAGGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAATCTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACATTTTCCCGTATCCGTCTCAACTACATATGGGCTTTGGGCTATAATCTACTTGGAATTCCAATTGCTGCAGGAGCTCTTTTTCCTTCTACACGATTTCGCTTGCCACCATGGGTTGCTGGGGCTGCCATGGCTGCCTCTTCTGTCAGTGTGGTTTGCTGTTCTCTACTGTTGAAGTATTATAGGAGACCCAAGAAGCTGGACAATCTTGAGATACGGGGCATAAGCATTGAGTGA 2790 0.4505 MTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQILFYPSFVNEETIREAIEDAGFQATLIRDDNETSVQICRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAEVHYTPNVVTYNQILEAVEDTGFQATLISTGEDMSRIDLQVEGIRTGRSMRLIENSLQALPGVQGVETHPLLNKVSLSYKPDLTGPRNFINVIEETGSRRFKAKIFPQEGGRRNSHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYIPGIKHGLDAKVVNMLTVGEIIRWVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSHGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVACDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATWVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFIAGRVRAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLRELYELVAAAEVNSEHPLAKAIVEYAKRLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMVDHNVALPIDAEEILAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIETVIAEAKPEQKAEQVKALQASGHRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03575 929 CDD HMA 73 135 IPR006121 GO:0046872
Lapu3g03575 929 NCBIfam heavy metal translocating P-type ATPase 309 909 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu3g03575 929 CDD HMA 1 58 IPR006121 GO:0046872
Lapu3g03575 929 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Lapu3g03575 929 ProSiteProfiles Heavy-metal-associated domain profile. 144 210 IPR006121 GO:0046872
Lapu3g03575 929 FunFam Copper-transporting ATPase HMA5 68 139 - -
Lapu3g03575 929 ProSiteProfiles Heavy-metal-associated domain profile. 69 135 IPR006121 GO:0046872
Lapu3g03575 929 Gene3D - 364 486 - -
Lapu3g03575 929 FunFam Probable copper-transporting ATPase HMA5 703 857 - -
Lapu3g03575 929 SUPERFAMILY HMA, heavy metal-associated domain 68 140 IPR036163 GO:0046872
Lapu3g03575 929 Gene3D - 144 206 - -
Lapu3g03575 929 CDD P-type_ATPase_Cu-like 235 910 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 725 736 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 596 610 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 747 757 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 800 819 - -
Lapu3g03575 929 PRINTS P-type cation-transporting ATPase superfamily signature 823 835 - -
Lapu3g03575 929 Gene3D - 563 857 IPR023214 -
Lapu3g03575 929 SFLD p-type atpase 578 852 IPR044492 -
Lapu3g03575 929 FunFam Copper-transporting ATPase 1, putative 364 486 - -
Lapu3g03575 929 NCBIfam HAD-IC family P-type ATPase 349 881 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g03575 929 Pfam Heavy-metal-associated domain 1 55 IPR006121 GO:0046872
Lapu3g03575 929 Pfam Heavy-metal-associated domain 73 132 IPR006121 GO:0046872
Lapu3g03575 929 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Lapu3g03575 929 Gene3D - 603 680 IPR023299 GO:0000166
Lapu3g03575 929 Gene3D - 681 731 IPR023299 GO:0000166
Lapu3g03575 929 SUPERFAMILY HAD-like 595 906 IPR036412 -
Lapu3g03575 929 ProSitePatterns E1-E2 ATPases phosphorylation site. 598 604 IPR018303 -
Lapu3g03575 929 Gene3D - 1 64 - -
Lapu3g03575 929 Gene3D - 69 141 - -
Lapu3g03575 929 Pfam E1-E2 ATPase 395 574 - -
Lapu3g03575 929 SFLD Haloacid Dehalogenase 578 852 - -
Lapu3g03575 929 SUPERFAMILY HMA, heavy metal-associated domain 139 207 IPR036163 GO:0046872
Lapu3g03575 929 SUPERFAMILY Calcium ATPase, transduction domain A 396 482 IPR008250 -
Lapu3g03575 929 ProSitePatterns Heavy-metal-associated domain. 75 104 IPR017969 GO:0046872
Lapu3g03575 929 Pfam haloacid dehalogenase-like hydrolase 592 814 - -
Lapu3g03575 929 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 925 - -
Lapu3g03575 929 FunFam Copper-transporting ATPase HMA5 1 62 - -
Lapu3g03575 929 SUPERFAMILY Calcium ATPase, transmembrane domain M 341 875 IPR023298 -
Lapu3g03575 929 NCBIfam copper ion binding protein 73 134 IPR006122 GO:0005507
Lapu3g03575 929 NCBIfam copper ion binding protein 1 57 IPR006122 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03575 Lapu-Chr3 59156568 59167847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03575 1 929 Primary Pumps ATPases AT1G63440 79.336 0.0 1522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03575 K17686 - gmx:100810141 1721.06