Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03567 ATGGCGTTCAGCGGCACCCAACAGAAGTGCAAGGCTTGCGATAAAACTGTTCACTTCGTCGAGGGCTTATCTGCCGATGGGGTCTCTTACCACAAAAACTGCTTCAGATGCAGTCATTGCAATGGCCTTCTCGCGATAAGCAACTACTCCTCCGGCGATGGAGTTTTATACTGCAAGGTGCATTATGAGCAGCTTTTCAAGGAAACTGGCTCCTACCCCAAGAAATCCCAGTCCTCTGGAAAGCCACCAAACGAGCTGAATAAGACACCAAGCAAGCTTTCTGCCTTCTTCTCTGGAACTCAAGAGAAATGCTCAAAATGCAAGAAAACTGTCTATCCATTGGAAAAGGTGTGCGCATGGAGGGTGTTTCCTGACCCCTTCAACCTATGCTGCTCTTGA 399 0.4837 MAFSGTQQKCKACDKTVHFVEGLSADGVSYHKNCFRCSHCNGLLAISNYSSGDGVLYCKVHYEQLFKETGSYPKKSQSSGKPPNELNKTPSKLSAFFSGTQEKCSKCKKTVYPLEKVCAWRVFPDPFNLCCS* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03567 132 PANTHER OS06G0237300 PROTEIN 99 119 - -
Lapu3g03567 132 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lapu3g03567 132 MobiDBLite consensus disorder prediction 70 91 - -
Lapu3g03567 132 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lapu3g03567 132 FunFam LIM domain and actin-binding 1 4 74 - -
Lapu3g03567 132 Pfam LIM domain 10 65 IPR001781 -
Lapu3g03567 132 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lapu3g03567 132 Gene3D Cysteine Rich Protein 4 74 - -
Lapu3g03567 132 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Lapu3g03567 132 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03567 Lapu-Chr3 59081639 59082556 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g03567 LIM 5.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03567 - K09377 gmx:100499865 232.646