Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03564 ATGTGGGCTTGGCTGCTTAGTGAAGGGCGTAGGGCGGTGTCCGAGGTGGCGTGCACCTACAACTGGGTGGCTCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCCGGCGGTGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAACACGCAAGAGACAAACAGAAGAGACTCATCGAACAAGAGAAGCAGCTCTATGAGGCTCGCATTCGCTCCCACATCCGTTCCGCCCTCTCCCCCGACCACCGCTCCGCCGCAGCCGCCACCCACCGCCCTCTCTCCCCTAACGACCACGTCAAAGCCCTCGCCGACCGCTTTGTCAAAGAAGGCGCCGAAGATCTCTGGAACGCGCGCGACGGTCCCCTGACTCCAAACCCGACACCGACACCGACCCCGACCCCGACACTGACCCCAAACCTTAATTTTCGCCCCAAACATTTTAGGGCCTACCGTTCGGTTCCCGAGGCTGGGAACAAACGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAGGGTAGTGACGATTCTTCTTCCGGTGAGAGCGAGAGCGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCTTTGGGTGAGTATGATGTGAAGAGAGAGAAGAGGGTTGTGCCCAAGACATCTGAAGAAGTTGAGTTTATTAGGCAGGAGCTTAATAAGCGGAAGTTGAGACAGATTGAGGAGCAAGAGAGTGAGAAACAACACAGCTATGAAAGCATTCTAAGCAACACAAGATTTGATGAGTGTGGTATATCACCGCAAACTGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTGCAAGAGGCTAGCCTCTCTATTTGCCTTGAGGGTCTGGATGCTTTAGTCAAATCTAAAACTGGCACCGGAAAAAGTGTAGCCTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAAGACATCTCAACGGGTACCCCCAATATATGTTCTTATTCTCTGCCCTACAAGAGAACTTGCCAGTCAAACTGCCGCTGTAGCAAAAGTTTTGTTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAGAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGAAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACAATACCAAAGGAGGTACGTCGTATATCCCAGCTTGTTTTGAAAAGGGAACACAAATATATTGATACAGTTGGAATGGGTTCCGTGGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCAGTGCTCCTCACGAGTCACATTTTCAATTAGTGCATCATATTCTGAGGGAGCATATCTTGCAAACACCTGATTATAAGGTTATCGTATTCTGTATAACTGGAATGGTGACCTCACTCGTGTATAACCTTCTCCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGTCTTGGAAGAACGGGTCGGGAAGACAAAGAAGGGGAAGGCGTATTATTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATTAAGGATCTACCTCTACAGAAATTCCCCTTACCAGACATAGATCCACAGGCAAAACTGAAGATTGAGAATTCGATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTATTATAACTCTATCAGGGAGATTGGGAGGGAAAAGACCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCCGGCATTAGAATTCGTAAATAG 2166 0.4635 MWAWLLSEGRRAVSEVACTYNWVALRHMGGGPRTFPGGVNKWKWKRMHEKHARDKQKRLIEQEKQLYEARIRSHIRSALSPDHRSAAAATHRPLSPNDHVKALADRFVKEGAEDLWNARDGPLTPNPTPTPTPTPTLTPNLNFRPKHFRAYRSVPEAGNKRVGAHKYRFWRKGSDDSSSGESESENENELSLKTGSSASLGEYDVKREKRVVPKTSEEVEFIRQELNKRKLRQIEEQESEKQHSYESILSNTRFDECGISPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSKTSQRVPPIYVLILCPTRELASQTAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLKMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYIDTVGMGSVETPVKVKQSYLSAPHESHFQLVHHILREHILQTPDYKVIVFCITGMVTSLVYNLLREMKMNVREMHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGVLLIAPWEEYFLDEIKDLPLQKFPLPDIDPQAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03564 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 466 IPR014001 -
Lapu3g03564 721 CDD SF2_C_DEAD 481 614 - -
Lapu3g03564 721 SMART ultradead3 271 482 IPR014001 -
Lapu3g03564 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 650 IPR001650 -
Lapu3g03564 721 MobiDBLite consensus disorder prediction 116 144 - -
Lapu3g03564 721 PANTHER RNA HELICASE 214 650 - -
Lapu3g03564 721 Gene3D - 217 467 IPR027417 -
Lapu3g03564 721 Pfam DEAD/DEAH box helicase 276 454 IPR011545 GO:0003676|GO:0005524
Lapu3g03564 721 MobiDBLite consensus disorder prediction 124 138 - -
Lapu3g03564 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 622 IPR027417 -
Lapu3g03564 721 Gene3D - 476 701 IPR027417 -
Lapu3g03564 721 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 252 280 IPR014014 GO:0003724
Lapu3g03564 721 SMART helicmild6 524 605 IPR001650 -
Lapu3g03564 721 Pfam Helicase conserved C-terminal domain 499 603 IPR001650 -
Lapu3g03564 721 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03564 Lapu-Chr3 59061408 59066044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03564 252 631 Eukaryotic Initiation Factors Gene Family AT3G19760 27.506 1.82e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03564 - - vun:114177584 1286.94