Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03559 ATGGACCCTTATGTGATCCTCATGTGTCGCACTCAAGAGCAAAAAAGCAGTGTTGCAACAGGTAAAGGAAGTAATCCAAAGTGGAATGAAAATTTTGTATTCAACGTTTCTGAAGGCGTTAACGATCTCAAATTGAAGATCATGGACAGTGATTCCATGTCTACGGATGATCTCGTGGGAGAAGCTACCATTTCGCTGGAAGCATTGTTCAAGGAAGGGAGTATTCCACCTACTTCATACAATGTTGTCAAGGATAACAAATATTGTGGGGAGATTAGAATTGGCCTCACTTTTAAGCGTCAGGATCGCAGGGAACGCAGCCTAGAGGAGGATTTTGGAGGATGGAAGGAGTCTGGTTACAGAGACTAA 369 0.4309 MDPYVILMCRTQEQKSSVATGKGSNPKWNENFVFNVSEGVNDLKLKIMDSDSMSTDDLVGEATISLEALFKEGSIPPTSYNVVKDNKYCGEIRIGLTFKRQDRRERSLEEDFGGWKESGYRD* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03559 122 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 101 IPR035892 -
Lapu3g03559 122 MobiDBLite consensus disorder prediction 103 122 - -
Lapu3g03559 122 Pfam C2 domain 1 73 IPR000008 -
Lapu3g03559 122 PANTHER C2 DOMAIN-CONTAINING 1 102 - -
Lapu3g03559 122 SMART C2_3c 2 78 IPR000008 -
Lapu3g03559 122 Gene3D C2 domain 1 100 IPR035892 -
Lapu3g03559 122 ProSiteProfiles C2 domain profile. 1 79 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03559 Lapu-Chr3 59029036 59030486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03559 2 102 C2H2 Transcription Factor Family AT4G21160 33.663 1.72e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03559 - - gmx:100782974 208.379