Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03552 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGAATCAGGCAAACTTACCCAACATGGAAACAATAGAAGGCTCAAGCAGATATGGAATGTTTAGAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTAGCACAGAATCAGTGTTGACCAAGTCCAAAGATGCTGTAGGAGTCTCCAAAATGACATCCTCATCTTCTGGGTCATCTAAGAGAGCTCGTGCCCTTGGCAACGGGACACAAACAGTGTCATGCCTTGTCGACGGGTGCCACTCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGCGAAGTCCATTCCAAAACTGCACAAGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCGCTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTGATGAATCCTACGTGGGGTGGAATTGTTGCTGCTGGTGATGTCAGGCTTCATGGGCACAACCAACAGCACCACAACCAGGGTGACCTTTTTCTTGGGTCTTCTCCAACCGGTTATAAAGAAGGGAAGCAACTGGGCTTCATGCAAGGTGACCACACCCTCAACAACCAAAGCCCACATCTCGCAGGTGGTTCCGTGGGCCAGGCCCAGGTGTTTCTTAGGACCGGCCCCTATTCCGAAAGCGGTGGGCTGAGGTGCAAAATGTTGTGCGATAGCCTAACAAGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCCGGAAATGGGTTGAGCCAAATGGTGAACCCTCATTCCCCCCTTATGCAGCCGTTGGGCCTGAGCCTGCATGATAATAACAGCTTGGGGCCCGTGGACCCTGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATATATAACATAGGTTCTAATGGATCCCAGGGGAACGAAGCCCCTCCACTGTTTCCCTTCCAATGGGAATAG 1155 0.5074 MDWNLKAPSWDLSEVNQANLPNMETIEGSSRYGMFRSKGEFSVDLKLGQVGNSSTESVLTKSKDAVGVSKMTSSSSGSSKRARALGNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVAAGDVRLHGHNQQHHNQGDLFLGSSPTGYKEGKQLGFMQGDHTLNNQSPHLAGGSVGQAQVFLRTGPYSESGGLRCKMLCDSLTSSVHDSSRALSLLSSPQPHSPGNGLSQMVNPHSPLMQPLGLSLHDNNSLGPVDPVLGLNGSDHSSSIYNIGSNGSQGNEAPPLFPFQWE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03552 384 MobiDBLite consensus disorder prediction 157 179 - -
Lapu3g03552 384 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Lapu3g03552 384 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Lapu3g03552 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 342 IPR044817 GO:0003677
Lapu3g03552 384 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Lapu3g03552 384 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Lapu3g03552 384 MobiDBLite consensus disorder prediction 306 326 - -
Lapu3g03552 384 Pfam SBP domain 94 167 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03552 Lapu-Chr3 58982229 58985584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03552 1 384 SBP-box Gene Family AT5G50670 43.176 8.23e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu3g03552 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03552 - - gmx:100806507 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03552 3 58982229 58985584 Lapu3g03552 3 58982229 58985584 ECH
Lapu3g03552 3 58982229 58985584 Lapu9g00979 9 15374210 15378386 PCT