Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03545 ATGTCGGAATCTCGCCCCCCTAAGCGCCCCAAAGTAACTAGAGGAGACGATGATTACATGCCAGGAAATATTCTCGAGATCGAGCTTTGTAATTTCATGACATTTGATTACTTAAAATGCAAACCTGGGCCTCGATTGAATCTTGTAATTGGGCCCAATGGTTCCGGCAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTTTGTGGAGAGCCCCAGTTACTTGGGCGAGCTACAAGTATTGGAGCATATGTGAAGCGTGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGGTGACCATAAACAAGAACACATTACCATTATGCGGAAAATTAGTACTAATAACAAGTCTGAATGGTTGTTCAATGGAAATGTGGTGTCGAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACCCAGTTTTTACCACAAGACAGGGTCTGTGAGTTTGCGAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAACTTCCAGAGCAACATCGAACATTAGTTGATAAAAGTCGATCATTGAAACAAATTCAGTTGTCTCTGGAGAAAAATGAAGGAACCTTGAAACAGTTGAAGGAACGGAATGCTGAATTAGAGACAGATGTTGAGCGTGTTCGTCAACGAGATGAACTTCTTGCCAAGGCTGAAGCAATGAAAAAGAAGTTGCCATGGCTGAGGTATGATATGAAGCAAGCAGAATATCGGGAAGCTAAGGAACGTGAGAATGATGCAGAAAAGGCATTGAAGGAAGCTGCAAAGTTATTAAATGATCTTAAAGAACCTATTATGAAACAAAAAGAAGAGAAGGCTGCTTTAGATGCAAAATGCAAAAAGGTTAGCCGCAATGTGAATGAGAATGCAAAGAAGAGAATTGAACTTATGGAAGAGGAGAACAAATTGGACGTGGAATTACAAGGAAAATTCAAGGAAATGGAAGAGTTAAGGAGACAAGAAGAAACTCGACAACAAAAACTTGTAAAAGCAAGGGAGGAACTTGCTATCGCTGAACATGAACTTGAGAACCTGCCCCCTTATGTACCTCCTAGGGATGAGCTTCAAAGACTAAAAGCCGAAATTGGGGAATTGGATTATTCTGCTAATCAAGTGAGGCAGAATAAGTCACAAGCAGAGAATGAAATAAAGAGGAAGAAGTCATCCATGATGCAGAATAAAGAGAGGTTGATGGAAATGGATAATAAAAGTACAAAGTGTTTGCATGTATTGCAAAGGTCAGGAGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCGACACGAATTCAATAAGGAGGTTTATGGCCCAGTTTTAGTAGAGGTGAATGTATCAAATAAGGTTCATGCTGCATATCTAGAGGGTCAAGTGGCTCACTACACTTGGAAGTCCTTCATTACACAAGATTCTGGTGATCGAGATCTTTTGGTGAAACACCTGCAGTTCTTTGATGTCCCAGTTTTAAATTATACTGGTGATGGTGGGCACCAAAGAGAGCCTTTTGAAATTTCTGAGGATAAACGTGCGCTTGGCATATACTCTCGGTTGGATCAAATTTTTGATGCTCCTATTGCCGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATAATTCATATATTGGATCCAAAGAAACTGATCAGAATGCTGATGAGGTCCCAAAATTGGGAATTATAAATTTGTGGACGCCTGAAAATCATTACCGGTGGTCCAAGTCTAGATATGGAAATCATGTCTCTACAGTAGTTGAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAGAAGCTGCGTTCTCAGCAAAAGGATCTTGAAGAAGTCATTGCTAATTTGGAGGAATGTGTTAAAAAGTTTCAAGATGAAGAAAGAAGCTTATTGAATCAAGCTGCTAATCTTCGTAAGCAGTGGGAAGGCATTAGTATTACAGTACAGAATGAGCATAAAAAACGTCAAACACTCGTTAGCCGTATTGAGCAGAGGAAAGGGTTATTAAAAGTGATGGAGGAACGGGATGATCTAGATACTGAGATAGCAAAGCTTGTTCATCAGGCTTCTAAGTATAACATACAGCGGTTCCGTAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTATAGACGAATTTTTATTGAACAACGTATGGCTTTTGTTGAATTTGATGCAAAGATTGGAGAAATGGACGCTAACCTGAAGCAGCATGAAAATTTTGCCGTGCAAGCATCATTACACTTTGAAAACTGTCAGAAAGAAACTGAGAATTGTAGACAGAAGCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCGGCTTACACCCGAGCTAAAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAACTGGAGGTAGCTATCCAGGATACCACTTCTCAAGCCAATTCGATCCTCTTTGTCAATCATAACATATTGGAACAATATGAAGATCGGCAACGACAGATAGAAGATCTTGCAGCAAAACTGGAAGAAGACAAAAAGGAATCTACCCGGTGTTTGGCTGAATTAAATAACATTAAGGGAAAATGGCTTCCAACATTGAGAAACCTTGTGGCAAAAATAAATGAAACTTTCAGTTATAATTTCCAAGAGATGGCCGTTGCTGGAGAAGTTTTGCTAGATGAGCGTGATATAGATTTTGATCAATTTGGAATACTCATAAAAGTTAAATTCAGAGAAAATGGACAGCTTCAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTGACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCCCAGTGTTTCTTACTTACCCCAAAATTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTGATGAATGGCCCTTGGATTGAGCAACCCTCGAAGGTCTGGACTACTGGTGATCGATGGAGTGTTATCACGGGACTTGTTGGAGACACCCTTTGTTGA 3159 0.3976 MSESRPPKRPKVTRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKQEHITIMRKISTNNKSEWLFNGNVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRTLVDKSRSLKQIQLSLEKNEGTLKQLKERNAELETDVERVRQRDELLAKAEAMKKKLPWLRYDMKQAEYREAKERENDAEKALKEAAKLLNDLKEPIMKQKEEKAALDAKCKKVSRNVNENAKKRIELMEEENKLDVELQGKFKEMEELRRQEETRQQKLVKAREELAIAEHELENLPPYVPPRDELQRLKAEIGELDYSANQVRQNKSQAENEIKRKKSSMMQNKERLMEMDNKSTKCLHVLQRSGAEKIFEAYKWVQEHRHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDVPVLNYTGDGGHQREPFEISEDKRALGIYSRLDQIFDAPIAVKEVLISQFNLDNSYIGSKETDQNADEVPKLGIINLWTPENHYRWSKSRYGNHVSTVVEQVERPQLLLNNLNVGEIEKLRSQQKDLEEVIANLEECVKKFQDEERSLLNQAANLRKQWEGISITVQNEHKKRQTLVSRIEQRKGLLKVMEERDDLDTEIAKLVHQASKYNIQRFRNAMEIKDLLVEAVSYRRIFIEQRMAFVEFDAKIGEMDANLKQHENFAVQASLHFENCQKETENCRQKLTDSLKYAKSIARLTPELKKEFLEMPTTIEELEVAIQDTTSQANSILFVNHNILEQYEDRQRQIEDLAAKLEEDKKESTRCLAELNNIKGKWLPTLRNLVAKINETFSYNFQEMAVAGEVLLDERDIDFDQFGILIKVKFRENGQLQVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSVITGLVGDTLC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03545 1052 Coils Coil 282 358 - -
Lapu3g03545 1052 Coils Coil 247 277 - -
Lapu3g03545 1052 Coils Coil 372 413 - -
Lapu3g03545 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Lapu3g03545 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 305 IPR027417 -
Lapu3g03545 1052 Gene3D - 23 228 IPR027417 -
Lapu3g03545 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 1003 IPR027417 -
Lapu3g03545 1052 Gene3D - 847 1022 IPR027417 -
Lapu3g03545 1052 Coils Coil 194 228 - -
Lapu3g03545 1052 Coils Coil 837 875 - -
Lapu3g03545 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1044 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lapu3g03545 1052 Coils Coil 621 662 - -
Lapu3g03545 1052 FunFam Structural maintenance of chromosomes 5 848 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03545 Lapu-Chr3 58859781 58881350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03545 1 1043 Structural Maintenance of Chromosomes family AT5G15920 62.704 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03545 K22803 - gmx:100778678 1853.57