Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03526 ATGGGTTGCGCCCTTGGAAAACCTGCGGATTCCATCGACTGTTGCCAGCGTAAATCCGCGACTGCCGGCGGCGGAAATAATGCCGTTGAGATTCGGGAGAAGCAGGGCACTCTGCACGTCGGCGAACTTTCCGGCGTGGTACTGGCGCCCGAGCGCCGGAGACCTCGACTTGACTCATTCATGACGAGCAACCAAGGGTGGCCGTCGTGGTTGATGGTCGTCGCCGGCGACGCACTTAGAGACTGGACTCCTCGCCGTGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTCGTAACGGGGAAAATAGTGGCTTTGAAGAAGGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGATTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGTTGGTCTTGCAGCTGGTGTGGGTGCCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAACTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGAGATATTAAAGGTGCCAATCTGCTTATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATCCTAAACAAAAGTATCCTATGACCAGTAGAGTTGTGACCCTTTGGTACCGTCCCCCTGAGCTTCTTCTAGGGGCTACATCCTATGGCGTTGGTGTCGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAACCTTATAAAAGAAACATCTTAGAAACATTCAAAGATTTTCCTTCTTCTTCATTACCTTTGATTGAAACTCTTCTTGCAATAGATCCTAATGATCGCGGCACTACCTCATCTGCTCTAAATAGTGAATTCTTTACCACCGAGCCCTATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTAGATATAAAACTGAGAGATGAAGCTAGAAGGCAAAAAGATGTGAGTGGAAAAACTAATGCAGTTGATGGTGCAAAAAGGGTTAGAGTACGTGAGCGTATTTTGGCCATGCCGGCCCCAGAAGCCAGTGCAGAGATTCAAACGAACTTAGATCTTTGTCTTGTTTGCTTCCTTGAGCAGCATTACAATTTACATGTGTCTTTTCAGAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTGGATGCATCAAATAAAGGAGCTGTTTCATTTGGGGCCACCAAAACTTCCACGGCCTCTACCATATTTGATACAAAATCTTCTGGATCTGTTATAAATAATGATCCTGCCATAGACAAAGTGAAGAGAAGTAATACTGCAGATTCTCAGAGGGCATCATCTTGGAAATTTTTGCGTTCATTCAAGCTATCAACAATTGGCCATTCATCTGATTTATTATTTAAAAGCAATTAA 1710 0.4462 MGCALGKPADSIDCCQRKSATAGGGNNAVEIREKQGTLHVGELSGVVLAPERRRPRLDSFMTSNQGWPSWLMVVAGDALRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLVGLAAGVGAKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGANLLIDNEGILKIADFGLATFYDPKQKYPMTSRVVTLWYRPPELLLGATSYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRNILETFKDFPSSSLPLIETLLAIDPNDRGTTSSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEARRQKDVSGKTNAVDGAKRVRVRERILAMPAPEASAEIQTNLDLCLVCFLEQHYNLHVSFQRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATKTSTASTIFDTKSSGSVINNDPAIDKVKRSNTADSQRASSWKFLRSFKLSTIGHSSDLLFKSN* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03526 569 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Lapu3g03526 569 PANTHER CELL DIVISION PROTEIN KINASE 88 378 - -
Lapu3g03526 569 CDD STKc_CDK9_like 90 374 - -
Lapu3g03526 569 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Lapu3g03526 569 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03526 569 Gene3D Transferase(Phosphotransferase) domain 1 173 414 - -
Lapu3g03526 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lapu3g03526 569 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03526 569 FunFam probable serine/threonine-protein kinase At1g54610 77 172 - -
Lapu3g03526 569 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Lapu3g03526 569 FunFam probable serine/threonine-protein kinase At1g54610 173 414 - -
Lapu3g03526 569 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03526 Lapu-Chr3 58655072 58660917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03526 82 412 Core Cell Cycle Gene Families AT5G10270 50.720 1.39e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu3g03526 Pkinase 9.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03526 K08819 - gmx:100789359 950.273