Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03523 ATGGCAGCTTTTTCATTCCAATACCACCATCCCTTTCCAGTTGACTCCCCATGCTTCTCAATCACTCCTCCCAAAAAGAAACTCTCTTCTATGGGAGAGAAACAACCCCTTACAAACACTGCTGCTACCCTTTCTCCTTCTCATTATATTGACAATATTCTTCATCAGGAAACGTCTCATAATAGTGTCACTAATCAAGAAACTAGCTGTGTTGATCAAAGCTCCAAGGCTACCATCAGTGACACTGAGCCTTCTGTGGTAAAAAACCATAGTCCTGAGACATCCATGGTTGTGGACAAGCTTGAAAATGATGAACAGGTCACTCAGAAGGTGACCCCCACGCAGAAGAAGAGAAGAACAAGAAATGGACCTTCCTTGAGCAGCCCCTTATCAATGGACTCAACAGAAGGAGCAAACAAGAAACAAAAGAATAGCAATGGTGGGGATCAAGGAGAAAACAAGCCAAAAGAAGTGAAGAAGGATGAGAAGAAAGGTCCAGAAGATCCTCCAACAGGGTATATTCACGTTAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTTGCTGAAAGGGTCAGAAGGGAGAAAATAAGTGAAAGGATGAAGACATTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCAATGTTTTTTGACTTGGCAATGGACTTCGACACCCTCATGGTTAGACCCGATCAGAAATTAAATAATGTAGCATCCCCATCACTAGCATGTGTATCACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACTAGCAGCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATGTCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCGCCAATAATATCAATTAA 1074 0.4311 MAAFSFQYHHPFPVDSPCFSITPPKKKLSSMGEKQPLTNTAATLSPSHYIDNILHQETSHNSVTNQETSCVDQSSKATISDTEPSVVKNHSPETSMVVDKLENDEQVTQKVTPTQKKRRTRNGPSLSSPLSMDSTEGANKKQKNSNGGDQGENKPKEVKKDEKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDFDTLMVRPDQKLNNVASPSLACVSQCRPNQAIAFADTTTLTTTTSSFPTANNDDYLLDYSSSSFLQPHRPNVFFEYNGGQIWEVDQRQKFLHPYGFANNIN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03523 357 MobiDBLite consensus disorder prediction 61 92 - -
Lapu3g03523 357 FunFam Basic helix-loop-helix transcription factor 179 251 - -
Lapu3g03523 357 Gene3D - 179 250 IPR036638 GO:0046983
Lapu3g03523 357 MobiDBLite consensus disorder prediction 118 149 - -
Lapu3g03523 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 279 IPR024097 GO:0006355
Lapu3g03523 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 249 IPR036638 GO:0046983
Lapu3g03523 357 SMART finulus 188 238 IPR011598 GO:0046983
Lapu3g03523 357 CDD bHLH_AtBPE_like 172 248 - -
Lapu3g03523 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 232 IPR011598 GO:0046983
Lapu3g03523 357 Pfam Helix-loop-helix DNA-binding domain 186 233 IPR011598 GO:0046983
Lapu3g03523 357 MobiDBLite consensus disorder prediction 150 190 - -
Lapu3g03523 357 MobiDBLite consensus disorder prediction 61 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03523 Lapu-Chr3 58625491 58628636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03523 140 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.667 5.49e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03523 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03523 - - pvu:PHAVU_002G283100g 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03523 3 58625491 58628636 Lapu3g03523 3 58625491 58628636 ECH