Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03518 ATGTTGGGAGATATCTCTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAACGCACTGCAAAGCATCGTCCTTCTGGCTTCCCTCACCGCACTTCCCTCACCATGTCGTCTAGTTCTTGCATCAGAGAACGGTCGGTGGATCCAAAATTGGAGCTGCACCCTGATCAGACAGAAATTAGACTGTGGGAGAGGCTTGGCAAAGCTGCAATGTTGGACATTGAGTCGAGCTCTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACAGCAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTTGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATTTCCCTGGGAATGCTGATACTTGTCCAAAAGAAGCAGCTGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTATGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGGGTAGAGTAATTCACAATACCAGTTTTGAATGGCAACAAATAAAGGAAGCTGCAGAGAAAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGTGAAGTGACGTGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGGTGTCTCTTTTTTATGAGTTACGTACACGGTTCACCCTTGCTTGAAAACTCTAGCGCATTCAAGTCAAAGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTGCTGATGCTGGATCTTGTCATTAGAAATGAAGATAGGCTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCAGCAAATTTGTTGTTGGCTGGAAAGATTATCTCTGCAAATACAGATGTGCTAGAAGCCGCTTTTGATTCTGCAATTGACCGATATAGACCGAAGATGACATGGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACAATCCTGGCTTGATATCACATTCCTCTGATCTTTCAGATATCACAGAATCTCCAGTATCTCTTGACATGAACCTTGTAACTCAAACATCTGGAGAATCAATGTCTCCGGACATTAACATAGTAGCCATTGATTCTGGTGTTCCTCGGAGACCACCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCCAAGTTGATTGAGTTGCTAATTAACAGTTCTGAATTTGCCTCAAACCTGATATATGATGTAACTGGAGGGAAATTAGGATGTCCTCCACAAGAAGACACGAATAAAACTGATGTACATGCGAATGACGTAATGTCTGTAGTTCATGCGTTCCGTACTGGTTTCCGTGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATTATAAGCAAAATATCCTTGGGAGAATTTGACAAAGAAGATACTGTGGTTCCTGATTCACCTTCAGTGGCAGCTGGTGGGCACTGTTCCTCTCCATCATATTGCAGTGACTCTACTCCTCCATCAAGAGAAACTTGTCATGGAAAATTCTATAAAGGAAATGGGGAACCACTCCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAAAGAATTGGAACAATGGAATGAAATGCTTAAAAGTGATGCCATCAAACTATGCCAGGAGAACAATTTTAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGTTGTTGACGCATATGAACTTAAGGTTAGACTTGAGCATATTCTCGAGAGAATTGCACTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCATTGGCAGCAAGATCTGTTTACACACTGCAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTACAAGAATTTCTCTGTATGTGACAGTGATGATTACAACATCAGCAGCATATTTGAAGAAGCATGTGATTTTATAGATTATGTTGAACAAACAGGTCAAAGAGTTTTAGTTCATTGCTTTGAGGGTAAAAGCAGAAGTGTCACATTGGTCCTCGCATACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAAGCTTTGAAACGAGTTCACTGTCGAGCACAACCCAACGACGGTTTTGCAAAGATCTTGTTGGAATTGGATCAGAAACTACATGGAAAAGTTTCGATGGAATGGCATCAGCGAAAACCCATGATGAAAGTTTGCCCAATATGTGGGAAGAATGCTGGACTAAGCAGCAGCTCACTCAAGCTCCATCTGCAGAAATCACATAGAAAGCTATCCTCTGGGAGTGTAGATAGCGCCATGACAATGGAAATCCAGAAAGCTTTGACAGCTTTGAAGATTAGCCGTGGAGGGAGTGTCAGCCCCACCCAAAGACAATCTCATCCAATAATAGATCAATAG 2556 0.4233 MLGDISAGPAFKFTQWLQLVRKRTAKHRPSGFPHRTSLTMSSSSCIRERSVDPKLELHPDQTEIRLWERLGKAAMLDIESSSFSWDMLSSLHHTEHSSSNEQSEDEMNKALEVTVNSGGVVFFAFFNFPGNADTCPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQGRVIHNTSFEWQQIKEAAEKAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFKSKESAERTSEALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKIISANTDVLEAAFDSAIDRYRPKMTWAFQKERRSTSVDCRLDSHNPGLISHSSDLSDITESPVSLDMNLVTQTSGESMSPDINIVAIDSGVPRRPPAGKRANDQVNYPKLIELLINSSEFASNLIYDVTGGKLGCPPQEDTNKTDVHANDVMSVVHAFRTGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIISKISLGEFDKEDTVVPDSPSVAAGGHCSSPSYCSDSTPPSRETCHGKFYKGNGEPLRSLRLTTKLRDFHKFAKVDAESSKELEQWNEMLKSDAIKLCQENNFNPGFFEGSDNNCVVDAYELKVRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISSIFEEACDFIDYVEQTGQRVLVHCFEGKSRSVTLVLAYLMLRKKYTLLEAWQALKRVHCRAQPNDGFAKILLELDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSHPIIDQ* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03518 851 CDD DSP 625 762 - -
Lapu3g03518 851 Pfam Dual specificity phosphatase, catalytic domain 645 765 IPR000340 GO:0008138|GO:0016311
Lapu3g03518 851 Gene3D Protein tyrosine phosphatase superfamily 607 779 IPR029021 -
Lapu3g03518 851 SUPERFAMILY Protein kinase-like (PK-like) 15 391 IPR011009 -
Lapu3g03518 851 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 511 IPR035010 GO:0004721|GO:0009737|GO:0043622
Lapu3g03518 851 Gene3D - 231 380 IPR036940 -
Lapu3g03518 851 FunFam Dual specificity protein phosphatase PHS1 596 770 - -
Lapu3g03518 851 SMART dsp_5 624 766 IPR020422 GO:0006470|GO:0008138
Lapu3g03518 851 Pfam Actin-fragmin kinase, catalytic 63 325 IPR015275 -
Lapu3g03518 851 ProSiteProfiles Dual specificity protein phosphatase domain profile. 624 769 IPR020422 GO:0006470|GO:0008138
Lapu3g03518 851 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 693 745 IPR000387 GO:0016311|GO:0016791
Lapu3g03518 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 624 769 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03518 Lapu-Chr3 58573011 58579402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03518 1 847 Protein tyrosine phosphatase (PTP) family AT5G23720 63.205 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03518 K14165 - gmx:100791993 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03518 3 58573011 58579402 Lapu3g03518 3 58573011 58579402 ECH