Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03515 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGATTCATGGCCAAACCCAAACGCCAACGAATTAAGCTGCGTCTCATTGTGTGCCTACAAACCCATCTCCGAGATCCATGAACAATGGCATGTGCCCAACAACACCACCCAAAGCCACTCGCGTACTAGAGACATGGCCTTCTCCACCAACTTGGCTGATAACATGTTACTCCAACAACAGCAACCATTACACACTTTTTCTTCTTCCACTAACCTTGACTTATCTCAAGTGCACAACTTCCTCACACCCAAACCCTCCTTTTACCCGTTGGAGCAAGGCTTTCACGTCGGTTCCCATGTGGGATTTCCTGACCCTCAAGCTTTGAACAAGGTTCACCATGGTGGTGTCTTCTTCAGCTCAAATGATAATAACCAGTTAGCTCTTCCGAATTCAGCAACCATGTGTGCAATGCCTCCCCCACAAGACGGTGTTGGATTTCCGGGATTCAATAATATTTGTGATCATGTGGAGGGTTCGAGAAAGACCTTGTTTACGAGCATGTCCAACATACTGAGACCCCTTGAATCGTTCCCCTCGTCAGGTGCACAACCAACACTTTTTCAGAAGCGAGCAGCACTTAGGAAAAGTTTGGATAATAACTGCAAAGGCAAGAGTAAAGGGAATAGTGATAATAGCAAGAGGAAGACGAGTAATAATGGAGAAGGTGTTGAAGAGTCGGGGTTGAACTGTGTTTCTGATGAGAGTGATGAGAATAAGATGATGGAAGAGAGTGGAAAGAACGGCGGAAACAGCTCGAATAGCACTGTCACTGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGATCCATTGTTCCCAATATTAGCAAAATGGACAGGGCTTCAATACTAGGGGATGCAGTAGAATATTTGAAGGAGCTTCTGCAAAGGATCAGTGACCTTCACAATGAATTGGAGTCAACACCACCAGCTGGGTCTTCATTGACTTCAAGCTTTCTTCACCCCTTGACACCCAATATACCAGCACGTATGCAAGAAGAACTTTGTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGTGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGTGTAAAGATTGAGATGTGTTGTGAGCGCAAACCTGGTCTCTTGCTGTCTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCAGTCATCACCTATTTCAATGGATTTGCTATGGATATTTTCCAAGCACAGCACCGCAACGAAGGTGAAGATGTGAATCCAGAGCAAATCAAAGCAATTCTATTAGATTCAGCTGGCTTCCATTGCATGACCTAA 1416 0.4597 MMSGWMQDTEEQNSDSWPNPNANELSCVSLCAYKPISEIHEQWHVPNNTTQSHSRTRDMAFSTNLADNMLLQQQQPLHTFSSSTNLDLSQVHNFLTPKPSFYPLEQGFHVGSHVGFPDPQALNKVHHGGVFFSSNDNNQLALPNSATMCAMPPPQDGVGFPGFNNICDHVEGSRKTLFTSMSNILRPLESFPSSGAQPTLFQKRAALRKSLDNNCKGKSKGNSDNSKRKTSNNGEGVEESGLNCVSDESDENKMMEESGKNGGNSSNSTVTGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSIVPNISKMDRASILGDAVEYLKELLQRISDLHNELESTPPAGSSLTSSFLHPLTPNIPARMQEELCLSSLPSPNGQPVWVEVGLREGRGVKIEMCCERKPGLLLSTMRALDNLGIDIHQAVITYFNGFAMDIFQAQHRNEGEDVNPEQIKAILLDSAGFHCMT* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03515 471 CDD ACT_UUR-ACR-like 400 460 - -
Lapu3g03515 471 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g03515 471 Pfam Helix-loop-helix DNA-binding domain 290 332 IPR011598 GO:0046983
Lapu3g03515 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 353 IPR036638 GO:0046983
Lapu3g03515 471 MobiDBLite consensus disorder prediction 211 285 - -
Lapu3g03515 471 FunFam BHLH transcription factor 278 347 - -
Lapu3g03515 471 Gene3D - 275 346 IPR036638 GO:0046983
Lapu3g03515 471 MobiDBLite consensus disorder prediction 258 275 - -
Lapu3g03515 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
Lapu3g03515 471 SMART finulus 289 338 IPR011598 GO:0046983
Lapu3g03515 471 SUPERFAMILY ACT-like 397 465 IPR045865 -
Lapu3g03515 471 MobiDBLite consensus disorder prediction 211 225 - -
Lapu3g03515 471 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 180 467 - -
Lapu3g03515 471 CDD bHLH_AtAMS_like 286 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03515 Lapu-Chr3 58549504 58553628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03515 182 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 59.410 9.81e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03515 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03515 - - var:108344591 731.48