Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03514 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGAAAAGGAGAAAACAGTTCCGGTGGCTACAACAACGGCAGCGATGTTAGGAACGGTGGAGGAGAGCCTCAGAATGCTTCTTCTTCATCACCCGCTAGAGACGCTGAAACAGCGCTTTACCGGGAGCTTTGGCACGCGTGCGCGGGTCCGCTGGTGACTGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGATACGGACGAGGTGTTTGCTCAAGTGACCTTGCTTCCTGAGCCAAATCAAGACGAGAATGCCGTGGAGAAAGAGGGTCCTCCGGCACCCCCTCCTCGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCTTCTGATACGAGTACTCACGGTGGGTTTTCGGTGTTGAGACGACATGCTGATGAATGCCTCCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACCTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTCGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTCCGAGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCGTCGTCGGTTATCTCAAGCCACAGTATGCATCTTGGGGTTCTTGCCACTGCTTGGCATGCCATATTGACTGGAACCATGTTCACCGTGTATTACAAGCCTAGAATTTACAGCAATGTTGTCAAATTTATTTACAGGACTAGTCCAGCCGAATTTATAGTTCCGTATGATCAATATATGGAGTCTCTCAAAAACAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAGAGGTTTACCGGTACCATTGTTGGAATTGAAGATGCTGATCCGAAAAGGTGGCCTAACTCTAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACTTCAAACGTACCTCGTCCCGAGAGAGTTTCCCAATGGAAAATAGAGCCTGCTCTAGCTCCTCCTGCTCTTAACCCTTTACCCATGCCGAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCTGTTCTTACACGTGAAGCATCATCTAAAGTGGCTGTAGACCCTTTGCCAGCAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCTGAAAGCAATGAATCTGATACCGCAGAGAAGTCTGCGTGGTCATCTGCTGCAGATGATGAAAAGATTGATGTTGTTTCCACCTCAAGAAGGTATGGGTCAGAGAGCTGGATGTCCATGGGAAGGCACGAACCAACATATCCGGATCTACTTTCTGGCTTTGGGGCCCATGGAGATCAATCTTCTCATCCATCGTTTGTTGATCAAAATGGTGCTGTAGCTAACCTTAGTAGAAAACATTTTTTGGACCGCGAAGGCAAACATAATGTTCTTAGTCCGTGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTCTTGGACTCTAATACAAAAGGCTCTGCTCAAGGTGGTGATACTTGTCAAGTTCGAGGGAATTTGAGGTTTAGCAGCGCATTTGGTGACTATACTGTGCTTCATGGACACAAAGTTGAGCATTCACATGGAAGCTTTTTGATGCCACCGCCACTGCCAACTCAATATGAGAGTCCTCGTTCTAGAGAACTGTTACCCAAACCAATATCAGGAAAACATAGTGAGGTATCAAAACCGAAAGACACTGACTGTAAGCTATTTGGCATCTCACTTCTCAGTAGCCCCATTGCACTGGACCCTTCTGTATCACAAAGAAATGTTGCAATTGAGCCAGTTGGCCACATGCATACTACACACCAACAACGCACATTTGAAAATGACCCAAAGTCTGAAAACTCAATGGGATTGAAATCGGCTGATGGTCTGCTGATTAACGACCAAGAAAAGCCGTCCCAAACTTCTCAGCTACATCTTAGAGATGTTCAACCCAAATCTAATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCCCTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATCAGCTATTTGAATTTGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGATAATGAGGGCGATATGATGCTTGTTGGTGATGATCCCTGGCAGGAATTTGTTGCTATGGTACGCAAAATTTACATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGCTGAATCATTCAGCTTCAGAGGCCTGATAATTCGTATAGATTTGATTTCCAAAGCTTCCAGATTCCGAACTGGAGTGGAAAGGAGTAGGTGA 2586 0.4698 MASSEVSIKGNSVNGKGENSSGGYNNGSDVRNGGGEPQNASSSSPARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRIYSNVVKFIYRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVAVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGAHGDQSSHPSFVDQNGAVANLSRKHFLDREGKHNVLSPWPVVPSSLSLNLLDSNTKGSAQGGDTCQVRGNLRFSSAFGDYTVLHGHKVEHSHGSFLMPPPLPTQYESPRSRELLPKPISGKHSEVSKPKDTDCKLFGISLLSSPIALDPSVSQRNVAIEPVGHMHTTHQQRTFENDPKSENSMGLKSADGLLINDQEKPSQTSQLHLRDVQPKSNSGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPAESFSFRGLIIRIDLISKASRFRTGVERSR* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03514 861 Gene3D - 333 403 - -
Lapu3g03514 861 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 830 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu3g03514 861 Pfam AUX/IAA family 787 829 IPR033389 -
Lapu3g03514 861 Pfam Auxin response factor 285 378 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu3g03514 861 SUPERFAMILY CAD & PB1 domains 742 818 - -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 404 420 - -
Lapu3g03514 861 Gene3D - 156 261 IPR015300 -
Lapu3g03514 861 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Lapu3g03514 861 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Lapu3g03514 861 CDD B3_DNA 157 259 IPR003340 GO:0003677
Lapu3g03514 861 FunFam Auxin response factor 736 830 - -
Lapu3g03514 861 Gene3D - 737 830 - -
Lapu3g03514 861 ProSiteProfiles PB1 domain profile. 741 834 IPR000270 GO:0005515
Lapu3g03514 861 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 1 48 - -
Lapu3g03514 861 FunFam Auxin response factor 157 261 - -
Lapu3g03514 861 FunFam Auxin response factor 333 405 - -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 614 648 - -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 686 706 - -
Lapu3g03514 861 SMART B3_2 159 261 IPR003340 GO:0003677
Lapu3g03514 861 MobiDBLite consensus disorder prediction 422 436 - -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 404 439 - -
Lapu3g03514 861 MobiDBLite consensus disorder prediction 719 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03514 Lapu-Chr3 58543387 58549404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03514 1 832 B3 DNA Binding Superfamily AT5G62000 64.520 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu3g03514 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03514 - - gmx:100815956 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03514 3 58543387 58549404 Lapu9g00921 9 13964307 13969520 PCT