Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03513 ATGATCCTTTTGAATCTAATTAATGTGGTAGAGACATTCCAGGAACTGCAGGAAGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATACCATTGAGGTCAAGAAGAGATTCCAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATTTGCAATACTTTCAACAGGGTTATCAGCTATTGCATCAGATGGAACCTTTCATTAATGAGATTATGGATTATGTACATCGGTCAAAAGAAAATTACAATAACGAGCAAATTCGACTTTATCAAAGAATGCAAGACTACAAGAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTAAGTGGTCCTTATGGTTCTCCTCGTGGAGACTCTGCACTTCCATTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTAATGGAATCTGCTGCGAAAGGGAAGGTTCAAATCATTCGACAAGGACATCTTTCGAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTATTCTCGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCGGGTCATATGGCAGCAGTCAACCATCTCCAAAGAGGAATAGTGGCCCTGAAAATGGTTCTGGGATTCTGAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCATGATGAAAGATTTATAGCACGTCATACAGTAAACCTGCTGACGTCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTTAGGATTATTTCGCCGTCGAAGAACTATACGCTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCACCTTGTTGAGTGTCCATACACAGGGAATGCCTCTCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGATGAGTTAGAAAGTTATCCAGATGATGATCACGCTTTGACAGAAAAGCTTGCATTCAATAATTCCACCCGTAATAACCACTTACGTTCGTCTAGAAGTATGCACTTATGTAAACACAGCATGAGAACTGAAAAGCCAATCGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATTCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCATTGACACTTGATGTTAAAGTTTGGGATTCCTCTGTCTTAAGTATGCTCAAATCACTAGGCAATCTTTTTGCAAACTCAATTTGGGAGGAGTTGTTGCATTCAGAGAGTAATTTGCAAATTGTTGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGCTCTTCCATGCAAGAAAGCCAAAATATGATGATTCTATTTTATTAAAGGAAAGGTTCATTCATGCTAAGGTATTCCAAGAAAACTTCTAG 1485 0.3973 MILLNLINVVETFQELQEARASFEEARFNLVGTLNTIEVKKRFQFLEAVTGIMDAHLQYFQQGYQLLHQMEPFINEIMDYVHRSKENYNNEQIRLYQRMQDYKKQVYEESRLSLSGPYGSPRGDSALPFSRISNEVADVVMESAAKGKVQIIRQGHLSKRSSNLRADWKRRYFILDSRGMLYYYRKPWSGSYGSSQPSPKRNSGPENGSGILSRWLSSHYHGGVHDERFIARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIATLLSVHTQGMPLSADSENDDSHSDDNIDELESYPDDDHALTEKLAFNNSTRNNHLRSSRSMHLCKHSMRTEKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFANSIWEELLHSESNLQIVDTLASSSKENEEELFHARKPKYDDSILLKERFIHAKVFQENF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03513 494 Coils Coil 85 105 - -
Lapu3g03513 494 Pfam PH domain 152 285 IPR001849 -
Lapu3g03513 494 SUPERFAMILY ArfGap/RecO-like zinc finger 356 491 IPR037278 -
Lapu3g03513 494 ProSiteProfiles ARF GTPase-activating proteins domain profile. 357 494 IPR001164 GO:0005096
Lapu3g03513 494 PANTHER CENTAURIN/ARF 9 494 IPR045258 GO:0005096
Lapu3g03513 494 SMART arf_gap_3 357 474 IPR001164 GO:0005096
Lapu3g03513 494 MobiDBLite consensus disorder prediction 296 319 - -
Lapu3g03513 494 SUPERFAMILY BAR/IMD domain-like 9 173 IPR027267 -
Lapu3g03513 494 Gene3D Arfaptin homology (AH) domain/BAR domain 8 108 IPR027267 -
Lapu3g03513 494 Gene3D - 143 295 IPR011993 -
Lapu3g03513 494 SMART PH_update 151 288 IPR001849 -
Lapu3g03513 494 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 339 494 - -
Lapu3g03513 494 Pfam Putative GTPase activating protein for Arf 360 474 IPR001164 GO:0005096
Lapu3g03513 494 CDD ArfGap 360 488 - -
Lapu3g03513 494 PRINTS HIV Rev interacting protein signature 411 432 IPR001164 GO:0005096
Lapu3g03513 494 PRINTS HIV Rev interacting protein signature 388 405 IPR001164 GO:0005096
Lapu3g03513 494 PRINTS HIV Rev interacting protein signature 369 388 IPR001164 GO:0005096
Lapu3g03513 494 Pfam BAR domain of APPL family 10 91 IPR004148 GO:0005515|GO:0005737
Lapu3g03513 494 ProSiteProfiles PH domain profile. 150 286 IPR001849 -
Lapu3g03513 494 Gene3D Arf GTPase activating protein 337 494 IPR038508 -
Lapu3g03513 494 SUPERFAMILY PH domain-like 61 286 - -
Lapu3g03513 494 CDD PH_ACAP 153 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03513 Lapu-Chr3 58495501 58513534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03513 363 448 C2H2 Transcription Factor Family AT4G21160 52.874 9.14e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03513 K12489 - gmx:100792517 796.578