LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g03510	ATGCCTTTTCAAATCATGGATCACAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCAATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGATAGCATCACCAGGCGGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGTCTGCTGATGTCCCAGGCTAGTCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGTCCCAAATCATTGTCTGATGCATCTCTGCAGGCGGTGCCTACCTCATATGGTTTAATTGGGAACAAGATTGTTACCAATGCTGCCCCATGTGAAAGTAGTTTATTCTCAAGCTCAATGTCTGAGATATTTAGCCGAAAGTGTAAGTCTCTGTTTCATGCCTACTTACGGTTATTTGGAAATGATGTTCAGTCTGCTGGTTTTCCTGAGGAGCCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAGTAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTCAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGAGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATTCATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCTGTCTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTACGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAAGCATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCAGAATCTGCTCTTCGTGCTTTGAACAAAATTGACATTGCTGGGAAGCAAATCAAGCTTGAACCTGGCCATCCTAGGTTCGAAACATGCTGTTTGATGCACCAGTCTCATAAGGGGCCGGATGAGCGAGATTTTGGTCAAAGTATTACGGACAATTTACCATTAAGATCAAAGGCAACAGGGTCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAATCAGAGGTTTCAATCTACAGTGCGACAACCTATCAGTGCATTTGTTGATAATGCATTCATTAATGTCAACTCTGGTATTCACAACACTCTGAGAGGGGCATCTGCTGGAAAAGTGTCTGGAGTTTGTGAGTCTAGTGGCTATGTCGATGCAATGAAATTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATAGGGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATACAGGGAATGGGCTCAACTGGGAACTTGGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATGGACTGTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCGAGTAATGTGCTTTGGCAGAAATCGCCATCATTTGTTAATGATGCTTGTTCTCCGAGCCTTCCCCAGATGTCAAGCTTTGCTAGAACACCGCCTCATTTGCTGAGAACACCTCATATTATGGACCACCATGTTGGGTCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCGCGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTAACATCCAATGCTGGACAGAACTCTCCTAATCAGTTATCTCATGTCTTCCCTGTGAGACATCCCATGCCTTCGATGTCAAAATTTGATACTACCAACGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAGAAGCAATACGAACTTGACCTAGCTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTACGCATTCATAAACATGGTTGATCCTGGTCAGATTGTTCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCTTCACTGGCATATGCCCGAATTCAAGGAAAATCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAACGTTGCCGTCCTATTCTCTTCCACACTGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGCGACCCGGAAAATCTCGTATTGCTGGCGGCAGCGGCGGCGAGGAGAGTCGAAGCCAAGGGAGTCCTTCAGCTTTGGCAGGTGGAGAAGAGTCTGCCAATGGGATAGACTCTTCAAAGAACTAA	2871	0.4235	MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMIASPGGILNSTPPLDVNAKAGLLMSQASLPGDSIDSKESLNYRPKSLSDASLQAVPTSYGLIGNKIVTNAAPCESSLFSSSMSEIFSRKCKSLFHAYLRLFGNDVQSAGFPEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTNDDFEDFDLFSSGGGMEMEGDEHLSSGKVMNGLDGDYGFFGGSKGKLPFGQQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMKHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPRFETCCLMHQSHKGPDERDFGQSITDNLPLRSKATGSSGVIGSGCLENGYNQRFQSTVRQPISAFVDNAFINVNSGIHNTLRGASAGKVSGVCESSGYVDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSSNVLWQKSPSFVNDACSPSLPQMSSFARTPPHLLRTPHIMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFRGSWQLHPLDFPSHNVFSHVGGNGTELTSNAGQNSPNQLSHVFPVRHPMPSMSKFDTTNERMRNLYHRRNEASTNNVDKKQYELDLARILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMVDPGQIVPFHQAFDGKKWEKFNSEKVASLAYARIQGKSSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRIAGGSGGEESRSQGSPSALAGGEESANGIDSSKN*	957

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g03510	956	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	16	928	-	-
	Lapu3g03510	956	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	255	328	IPR000504	GO:0003723
	Lapu3g03510	956	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	342	407	IPR000504	GO:0003723
	Lapu3g03510	956	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	257	321	IPR000504	GO:0003723
	Lapu3g03510	956	CDD	RRM1_MEI2_like	254	329	IPR034453	-
	Lapu3g03510	956	SMART	rrm1_1	256	324	IPR000504	GO:0003723
	Lapu3g03510	956	SMART	rrm1_1	785	861	IPR000504	GO:0003723
	Lapu3g03510	956	SMART	rrm1_1	341	409	IPR000504	GO:0003723
	Lapu3g03510	956	Pfam	RNA recognition motif 2	783	879	IPR007201	-
	Lapu3g03510	956	FunFam	MEI2-like protein 5 isoform 2	244	338	-	-
	Lapu3g03510	956	SUPERFAMILY	RNA-binding domain, RBD	252	411	IPR035979	GO:0003676
	Lapu3g03510	956	MobiDBLite	consensus disorder prediction	928	942	-	-
	Lapu3g03510	956	SUPERFAMILY	RNA-binding domain, RBD	785	869	IPR035979	GO:0003676
	Lapu3g03510	956	MobiDBLite	consensus disorder prediction	894	956	-	-
	Lapu3g03510	956	Gene3D	-	248	338	IPR012677	-
	Lapu3g03510	956	Gene3D	-	339	432	IPR012677	-
	Lapu3g03510	956	CDD	RRM3_MEI2_like	786	871	IPR034454	-
	Lapu3g03510	956	FunFam	Protein MEI2-like 1	339	434	-	-
	Lapu3g03510	956	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	340	413	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g03510	Lapu-Chr3	58445776	58454412	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g03510	253	406	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.767	5.26e-09	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g03510	-		-	gmx:100797893	1677.53