Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03507 ATGTCTGCTGTGGTATCAGCCCTTGTTCAAGTCATTGGAGGCAATCCACTGCACACAGATCCAACAACAGTGTCTCAGTCCACTGCTGTTGAGAATAATTCAAACGAACAATCGCATCCACCTCAACACCAAGGAAACGCAAAAGGACACTACAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTCGGAACGTTTCCCACCGCGGAGGCTGCTGCACTCGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCCAAACTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCATTACAAACCTCTTCAACTCCCTTCCAGCTGCTTCGTCGTGACCCAGCAACTATCGCTACGCCTCCGAGTGACGCGTTTGTTTCTGCGTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAAATCCGCAGGTTCTTCTTCTTCTTCCGAGCCTCCAATGAAACGGACAACTGATTTCGATGCCAAACACAAACGTTGA 573 0.4974 MSAVVSALVQVIGGNPLHTDPTTVSQSTAVENNSNEQSHPPQHQGNAKGHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGSKAKLNFPEKVHLSGELGYLTNRPPSLQTSSTPFQLLRRDPATIATPPSDAFVSASSSPSSSTFSMKSAGSSSSSEPPMKRTTDFDAKHKR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03507 190 MobiDBLite consensus disorder prediction 16 44 - -
Lapu3g03507 190 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Lapu3g03507 190 PIRSF PTI6 144 187 IPR017392 GO:0003700
Lapu3g03507 190 PIRSF PTI6 16 114 IPR017392 GO:0003700
Lapu3g03507 190 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Lapu3g03507 190 MobiDBLite consensus disorder prediction 15 54 - -
Lapu3g03507 190 MobiDBLite consensus disorder prediction 138 190 - -
Lapu3g03507 190 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Lapu3g03507 190 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Lapu3g03507 190 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Lapu3g03507 190 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lapu3g03507 190 PANTHER DNA-BINDING DOMAIN 32 169 IPR044808 GO:0003700|GO:0009873
Lapu3g03507 190 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Lapu3g03507 190 MobiDBLite consensus disorder prediction 148 179 - -
Lapu3g03507 190 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Lapu3g03507 190 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03507 Lapu-Chr3 58409382 58412914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03507 1 132 AP2-EREBP Transcription Factor Family AT5G61890 58.571 2.27e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g03507 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03507 - - vra:106766671 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03507 3 58409382 58412914 Lapu3g03507 3 58409382 58412914 ECH
Lapu3g03507 3 58409382 58412914 Lapu9g00913 9 13696490 13698526 ECH
Lapu3g03507 3 58409382 58412914 Lapu9g00913 9 13696490 13698526 PCT