Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03488 ATGGCGGCGAAATCGAGTTCGAGTTCGACAAACGTGACGGTGAAGACGGCCTGGGTTCTGCCGCACCGGACGCAGAGCCTCCGGGAGGTGTACGAGGTGGGTAGGAAGCTGGGACAGGGGCAGTTCGGGACGACGTTCCTGTGCACGCGCCGCGCGAGTGGGGGGAAGTTCGCGTGCAAGTCGATTCCGAAGCGGAAGCTTCTGTGCAAGGAAGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCGGAGCACGCTCACGTGGTTCGCATCGAGGGCGCCTACGAGGACTCCTCCGCCGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAACTTTTCGACCGGATCGTTCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTGGAGGCTTGTCACTCGCTTGGAGTCATGCATAGGGACCTCAAGCCTGAGAACTTTCTCTTTGACACTGTTGATGAGGATGCCAAGCTTAAAGCTACCGATTTCGGGTTGTCCGTTTTTTACAAGCCTGGTGGGTTGTGGGTTCAACTAGAGTATGTGCTTGTTGATACAATCTTCAATTTGGTTACTTTGGTGATTTATTACGATCTTGACTGCACTTCCGTTCAAAAGCCTATTCCAATGTTGAATTTGCTTACTCTAATGTGTGAGGGTGTGGATGGTTTCTTTTCGTTGTTTAGTGTTTTGGTTTCTAAATTTAGCAAGTGGGGTGGGGTTGTTGCTCTGATTGGGGGTGGATTGATGAATTCCTTATCCCAAGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCGGAATCAGATGTGTGGAGTGCAGGGGTTATTCTGTATATTTTGTTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCGGGGATCTTCAGACAGATTTTACTAGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGCCACCCGTGGATTGTTGATGACAACATTGCACCAGATAAACCTCTAGATTCTGCAGTTTTATCACGCCTGAAACAATTTTCTGCAATGAATAAACTGAAAAAGATGGCACTGCGTGTTATTGCCGAGAGGCTATCTGAAGAAGAAATTGGTGGCTTGAGAGAGTTATTCAAGATGATTGACACTGACAACAGTGGAACCATAACGTTTGATGAGTTAAAAGATGGCCTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCAGATATTGATAAAAGTGGAACAATTGATTATGGTGAATTCATTGCCGCCACTGTGCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGTAGTGGTTACATAACCCTTGATGAGATACAACAAGCTTGTAAGGAATTTGGTTTAGATGATGTTCATATTGATGACATGATCAAGGAAATTGACCAAGATAATGATGGACAAATAGATTATGGGGAATTCACTGCTATGATGAGGAAGGGCAATGGAGGAATTGGAAGACGAACTATGAGAAAAACACTAAATTTAAGAGGTGCTTTTGGATTAGTAGACAATGGGTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1767 0.4618 MAAKSSSSSTNVTVKTAWVLPHRTQSLREVYEVGRKLGQGQFGTTFLCTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHAHVVRIEGAYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGGLWVQLEYVLVDTIFNLVTLVIYYDLDCTSVQKPIPMLNLLTLMCEGVDGFFSLFSVLVSKFSKWGGVVALIGGGLMNSLSQGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLRELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKEFGLDDVHIDDMIKEIDQDNDGQIDYGEFTAMMRKGNGGIGRRTMRKTLNLRGAFGLVDNGSNQVIEGYFK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03488 588 Gene3D - 485 588 - -
Lapu3g03488 588 CDD EFh 420 479 IPR002048 GO:0005509
Lapu3g03488 588 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Lapu3g03488 588 ProSitePatterns EF-hand calcium-binding domain. 534 546 IPR018247 -
Lapu3g03488 588 FunFam Calcium-dependent protein kinase SK5 485 580 - -
Lapu3g03488 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 546 - -
Lapu3g03488 588 CDD STKc_CAMK 30 371 - -
Lapu3g03488 588 FunFam Calcium-dependent protein kinase SK5 282 377 - -
Lapu3g03488 588 SMART efh_1 419 447 IPR002048 GO:0005509
Lapu3g03488 588 SMART efh_1 491 519 IPR002048 GO:0005509
Lapu3g03488 588 SMART efh_1 525 553 IPR002048 GO:0005509
Lapu3g03488 588 SMART efh_1 455 483 IPR002048 GO:0005509
Lapu3g03488 588 Pfam Protein kinase domain 31 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03488 588 Pfam Protein kinase domain 261 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03488 588 Gene3D Transferase(Phosphotransferase) domain 1 230 412 - -
Lapu3g03488 588 Gene3D Phosphorylase Kinase; domain 1 33 116 - -
Lapu3g03488 588 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Lapu3g03488 588 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Lapu3g03488 588 Gene3D - 413 484 - -
Lapu3g03488 588 FunFam Calcium-dependent protein kinase 1 33 116 - -
Lapu3g03488 588 FunFam calcium-dependent protein kinase SK5 409 481 - -
Lapu3g03488 588 FunFam CDPK-related kinase 3 23 191 - -
Lapu3g03488 588 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Lapu3g03488 588 SMART serkin_6 31 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03488 588 Pfam EF-hand domain pair 490 551 IPR002048 GO:0005509
Lapu3g03488 588 Pfam EF-hand domain pair 420 480 IPR002048 GO:0005509
Lapu3g03488 588 CDD EFh 492 551 IPR002048 GO:0005509
Lapu3g03488 588 ProSiteProfiles EF-hand calcium-binding domain profile. 525 556 IPR002048 GO:0005509
Lapu3g03488 588 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Lapu3g03488 588 ProSiteProfiles EF-hand calcium-binding domain profile. 487 522 IPR002048 GO:0005509
Lapu3g03488 588 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Lapu3g03488 588 Gene3D Transferase(Phosphotransferase) domain 1 117 201 - -
Lapu3g03488 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lapu3g03488 588 SUPERFAMILY EF-hand 411 552 IPR011992 -
Lapu3g03488 588 SUPERFAMILY Protein kinase-like (PK-like) 31 383 IPR011009 -
Lapu3g03488 588 ProSiteProfiles Protein kinase domain profile. 31 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03488 Lapu-Chr3 58243372 58250014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03488 261 580 EF-hand Containing Proteins AT4G09570 77.399 7.15e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu3g03488 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03488 K13412 - gmx:547825 630.557