Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03479 ATGGCCTTATCCATGGTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCATCTTCTTGGTCTGTGTTGTCTCGCCATTCGTCAATCCACAACCCTCTCTCTGCTTCTGTTTCTTCCTTTCATAGCCAACCTGTTGGTGGTGGTGGTGGATTGCCATCTTACATGCGTGGAACTGTGTATTGGGAACCCAATAAGCCTCTTTCAATCGAGGAATTTCACATGCCTCGTCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAGGGTAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATAAAAGGTGAAATTCCGTTTTTCAGTCCTTGTGTTCTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGACCACTCTCTGACAGCAAAACAATTGAAAGGCTTCCAGTTGGATCGCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTATTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTACGATGGTGAAACTAGACTCTTTCTTCGAAATAGTGGAAAACCAGTATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTACTACCAGAATCATTGCCATATACAAAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGTGCTATGGCTCACGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGCGTTGGCTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCTTCGGATATAATTGCTGTTGATGTTCAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGACCCCATTGAAAAGATAAATGAAATTACTGGTGGAAAGGGTGTTGATGTAGCTGTGGAAGCCTTGGGAAAATCACAGACATTTGCTCAGTGCACACTAAGTGTGAAGGATGGTGGAAAAGCTGTAATGATTGGACTGGCACCAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCGTATGGAGGCAGGGCGAGGCAAGATCTTCCAAAGCTAATTAGATTGGCAGAAACTGGTATCTTCGATCTTGGTCATGCTGTTTCTAGAACATACCCCTTTGAAGAGGCAGAAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTTGGCCGAGCTGTGATCGAGATATGA 1287 0.4499 MALSMVRRNIITHYSKFASSWSVLSRHSSIHNPLSASVSSFHSQPVGGGGGLPSYMRGTVYWEPNKPLSIEEFHMPRPKAGEVLIKTKGKACGVCHSDLHVIKGEIPFFSPCVLGHEITGEVVEHGPLSDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRNSGKPVYMYSMGGLAEYCVVPANGVSVLPESLPYTKSAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDEKLQKAKTFGATHTVNSAKEDPIEKINEITGGKGVDVAVEALGKSQTFAQCTLSVKDGGKAVMIGLAPAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFDLGHAVSRTYPFEEAEKAFQDLNEGKIVGRAVIEI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03479 428 SMART PKS_ER_names_mod 63 426 IPR020843 GO:0016491
Lapu3g03479 428 Gene3D - 235 372 - -
Lapu3g03479 428 FunFam Sorbitol dehydrogenase 235 373 - -
Lapu3g03479 428 Gene3D - 60 418 - -
Lapu3g03479 428 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 220 393 IPR036291 -
Lapu3g03479 428 CDD Zn_ADH10 56 427 - -
Lapu3g03479 428 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 115 129 IPR002328 GO:0008270|GO:0016491
Lapu3g03479 428 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 55 426 - -
Lapu3g03479 428 SUPERFAMILY GroES-like 54 254 IPR011032 -
Lapu3g03479 428 FunFam Alcohol dehydrogenase (Zinc) 60 249 - -
Lapu3g03479 428 Pfam Zinc-binding dehydrogenase 258 389 IPR013149 -
Lapu3g03479 428 Pfam Alcohol dehydrogenase GroES-like domain 81 213 IPR013154 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03479 73 379 Monolignol Biosynthesis Gene Families AT4G37990 27.331 5.83e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03479 - - gmx:100775182 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03479 3 58088211 58091959 Lapu3g03479 3 58088211 58091959 ECH