Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03478 ATGCCTCTTTTAAGGAGAACTCCTTTTGCCTTGGCGGAGCCCCCTGAGGAATTGAAGCCAGACGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCGAGATTATCTTGATTATTTGAAGCGATTGAATCTATACCGTCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACTGAGAAAGTTAATCAGTTTCCTAAAGAATTAATGACTACTGCTTTAGGGATTATTCAATACAGCATGCTACCTTTGAAGGACCTTGCTGATTCTATTGGTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGGAGTTCATCCATGCAGAATATTAAAAGTAATTCAGAAAGGAGTTGACACATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAAAATGTAAGTGGACGAGCTGAACTATGTGCAGGAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGAATATCAACTGATATTCCTGAAGAATTAAGAAGAAGGGCTTTTTACAGAGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAAAATGAGGAATCATTGGAAGAAGCCGATAACAGGAAAAGGAAGAAGTTGGACGGGTCACAAGTTGATGATTCTTGCCAAGAGAAAGAAAATGCTCAACACAAGAATGAAGCTATCAAATACCCCATTGATGATCTATTGGTGAAGCCTGGTCCAGATGATCCTGTTTTCACTGATCGCCCTTCTCCATCAAAAGACTTCCATATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATTTGCTCAATTCCTTTGGTAGACTGTTCAACCTGTGGCCATACTCTCTAGAAGATTTTGAAAATGCAATTTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGACGACGGTAAATACTCTTTGGCTGTGAAGAACCGCAAATTGAAGTCTAAGATTACAATGAATAATTGGACAGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCTGAACTGCAGAACCATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGGCAGTGCTAAATTAGAAATCTTATGTGAATTGGTCAATCAAGCCCTTGAAACCGCAGTTTTCAGGGAAAAGTTAGACAAGATTATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGGGAAGAAGCATTGGAAAATGCTAGGAGGAGAAGAGAAGAAAAAGAGCGGTTGAAAGCGGAGTCAGGAAGCAATGGATCTGTGGATGGGCTTCTGAATGGTGCAAAAGTACCAACGAATGATAATCATGGTATACAAAATGGAGACGTGGGAGAGAGAAGTCTTATAGGGATACAACCATCTGGGCAAAATAATCAATTGGATGGAAGTGAAATCAAGCCTTTAAATCCTGCTTCAAAAAAGACCCATAAGAAGCTAAATTCAGAGATGAAAGAACCAACAAAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTCCAAGGCTGATAAGGAGGATCCATCAGAGAAGAATACTGAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAGCGATTTGTTCGTAGAAGCCCATTAGGTAAAGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGAGATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTAAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAACTAGAAAAATATTATACTAAAATATGCTCAGAACTCCAGAAAAGGTCGAAGGATTTGATGCACAGGATTATAGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCCAGGCAGAACCCTGCCAATGCTTTCCTCAGGTATGTTAACAAGTGGAAAGAAGAATGA 2136 0.4031 MPLLRRTPFALAEPPEELKPDEPVYQIRFTKEIFRDYLDYLKRLNLYRQRVWMCKVTGKTGLTYEEAMVSEQHATEKVNQFPKELMTTALGIIQYSMLPLKDLADSIGEKLQERLFVGAELHGKKDDGVHPCRILKVIQKGVDTFCYEVAWLDKNKNVSGRAELCAGDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRRRAFYRDGLLVCSKKRKNEESLEEADNRKRKKLDGSQVDDSCQEKENAQHKNEAIKYPIDDLLVKPGPDDPVFTDRPSPSKDFHIPMSCVGDLLMVWDLLNSFGRLFNLWPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDDGKYSLAVKNRKLKSKITMNNWTEYLCYFLEVINIPELQNHEATIKRGHYGLVDGSAKLEILCELVNQALETAVFREKLDKIIEQRQALGATRREEALENARRRREEKERLKAESGSNGSVDGLLNGAKVPTNDNHGIQNGDVGERSLIGIQPSGQNNQLDGSEIKPLNPASKKTHKKLNSEMKEPTKNGKELSRKESPKQSKADKEDPSEKNTEEQRKEYFEREMEKRFVRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMSSLNCKGERERALRKQLEKYYTKICSELQKRSKDLMHRIIDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03478 711 MobiDBLite consensus disorder prediction 455 476 - -
Lapu3g03478 711 SMART testlast3 303 364 IPR018501 -
Lapu3g03478 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Lapu3g03478 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Lapu3g03478 711 MobiDBLite consensus disorder prediction 536 580 - -
Lapu3g03478 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 593 658 IPR028941 -
Lapu3g03478 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Lapu3g03478 711 Pfam DDT domain 304 361 IPR018501 -
Lapu3g03478 711 MobiDBLite consensus disorder prediction 237 266 - -
Lapu3g03478 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Lapu3g03478 711 Coils Coil 452 479 - -
Lapu3g03478 711 MobiDBLite consensus disorder prediction 455 580 - -
Lapu3g03478 711 MobiDBLite consensus disorder prediction 511 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03478 Lapu-Chr3 58079752 58086345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03478 567 657 Homeobox Transcription Factor Family AT1G28420 37.000 1.29e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lapu3g03478 WAC_Acf1_DNA_bd 3.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03478 - - var:108323886 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03478 3 58079752 58086345 Lapu3g03478 3 58079752 58086345 ECH