Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03470 ATGGCGAGTCCTCCGGTGAGTTCGTCGGCAGTAGCATATGAAGCATGGACAAGCCTAGCAGTGCCAGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTGTCAGCAACGTTGGTGGGGATTCAGAGCATGCCGGGCCTCGTCATTCTGTACGGAAGCATCGTCAAAAAGAAATGGGCCGTCAACTCTGCCTTCATGGCGCTCTACGCTTTTGCGGCGGTCGTCATCTGCTGGGTCACCTGGGCCTACAAGATGTCCTTCGGGGAGAAGCTGCTGCCGTTTTGGGGTAAGGCTGGGCCGGCGCTGGGCCAGAGGTTTCTCATAAAGCAGGCGGGCCTCCCCGCCACGCCGCACTATTTCAGTAACGGCGATCTGGAGACGGCCGAGATCCAACCCTTCTACCCCATGGCTACTATGGTGTGGTTCCAGTGCGTGTTTGCGGCCATTGCGCTTGTCATCTTGGCTGGCTCCGTTCTGGCTCGGATGAACTTCAAGGCCTGGATGATGTTCGTCCCGCTCTGGCTCACCTTCTCTTACACCATTGGCGCCTTCAGCTTGTGGGGTGGAGGCTTCTTGTTCCACTGGGGCGTCATGGACTACTCCGGTGGTTATGTCATTCATCTCTCTTCTGGGATTGCTGGCTTCACCGCAGCATATTGGGTGGGGCCAAGGTCGAAGAGGGACAGAGAGAGATTCCCGCCAAACAATGTGTTACTAACGTTGGCAGGTGCGGGGCTATTATGGTTGGGATGGGCGGGTTTCAACGGAGGAGATCCGTACGCGGCAAACACGGACTCATCGATAGCGGTGCTGAACACCAACGTTTGCGCCGCCACCAGCCTCCTCGTATGGACGTGGTTGGACGTTATTTTCTTCAAAAAACCCTCAGTTATTGGAGCCGTTCAGGGCATGATTACTGGCCTTGTTTGCATCACTCCCGGCGCTGGTTTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTGCTCTCAGGCAGTGTGCCATGGTTCAGCATGATGGTGCTGGGAAAAAAGTTGAAAATATTCGAAATGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTTGGAGGAATACTCACTGGCCTATTTGCTGAGCCACATCTAAGCACACTCTTTCTTCCTGTCACCAATTCCAAAGGAGGAATCTATGGAGGCCCTGGAGGAGTCCAGATTCTGAAGCAAATTGTGGGAGGTTTGTTCATCATTGGGTGGAACCTTGTGGCCACTTCAATTATTTGTGTGGTTATTAGTTTCATAGTTCCACTTAGAATGACAGAGGAAGAGCTTCTGATTGGGGATGATGCAGTTCACGGGGAAGAGGCTTATGCACTGTGGGGTGATGGAGAGAAACTTAGCATCTACAAAGATGATAACACACACCATGGAACCGTGTCTAGTGGTGCCACTCAAGTGGTCTAA 1458 0.5295 MASPPVSSSAVAYEAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQRFLIKQAGLPATPHYFSNGDLETAEIQPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSIAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLKIFEMVDDTLAVFHTHAVAGLLGGILTGLFAEPHLSTLFLPVTNSKGGIYGGPGGVQILKQIVGGLFIIGWNLVATSIICVVISFIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDNTHHGTVSSGATQVV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03470 485 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
Lapu3g03470 485 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Lapu3g03470 485 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Lapu3g03470 485 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Lapu3g03470 485 Gene3D Ammonium transporter AmtB like domains 5 458 IPR029020 -
Lapu3g03470 485 FunFam Ammonium transporter 12 458 - -
Lapu3g03470 485 PANTHER AMMONIUM TRANSPORTER MEP2 16 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lapu3g03470 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lapu3g03470 485 SUPERFAMILY Ammonium transporter 24 437 - -
Lapu3g03470 485 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lapu3g03470 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03470 Lapu-Chr3 57982685 57986430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03470 137 484 Inorganic Solute Cotransporters AT2G38290 67.887 2.61e-166 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03470 K03320 - gmx:100785993 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03470 3 57982685 57986430 Lapu3g03470 3 57982685 57986430 ECH