Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03459 ATGGGCAGAGAAAATGATTCAGCAATGGCAAAGGAAGAAGTTAGTGATGATGGTTCCTCGACTGTTGAGAATGGGAATTTAGAATCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAATTTTTGGGCATCACCCCAGGTTCAGAATTGTGTAAAAGCAAGGGGGAACAAGGGTGTGATGGAAATGGAATTCCCAGAAATATGTCTCTTAACAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAAGCGATTTGGAACTTGGTTTGTCTCATCAAGATAAACTAGTTGAACTTGGATGTTCTTGTAAAAACGATCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGTGATCCTGGTCCCGCAGAAGCTCATGCAAATGCTGGTGTGGATCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAGTAACAGAAGCCATAACAACATTAGCAATGTGGACACAGTCTCACAGGTTGCTTCTGAGCAGCCTCTGAATATTGTTACTGAAGATGCTGTCCCTGTACAGAATACTGCAACTAAGTGGGCCGTGGAGGGTACAGGTATCCTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCGTGGCTTATAGCCCCTCGTGTTGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGTGTTTGTGCTTTAGCAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTCGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1083 0.4358 MGRENDSAMAKEEVSDDGSSTVENGNLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGSELCKSKGEQGCDGNGIPRNMSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGPAEAHANAGVDPDAVAAIRRQRLSEIALWFCPHSNRSHNNISNVDTVSQVASEQPLNIVTEDAVPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03459 360 PANTHER ZINC FINGER, RING-CH-TYPE 4 327 - -
Lapu3g03459 360 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Lapu3g03459 360 SUPERFAMILY RING/U-box 125 164 - -
Lapu3g03459 360 SMART ringv_2 112 162 IPR011016 GO:0008270
Lapu3g03459 360 Pfam RING-variant domain 127 161 IPR011016 GO:0008270
Lapu3g03459 360 MobiDBLite consensus disorder prediction 1 18 - -
Lapu3g03459 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 171 IPR013083 -
Lapu3g03459 360 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03459 Lapu-Chr3 57854216 57859582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03459 1 350 C3H Transcription Factor Family AT5G08750 64.365 1.99e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03459 - - gmx:100805323 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03459 3 57854216 57859582 Lapu3g03459 3 57854216 57859582 ECH