Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03456 ATGCCAGGAGAATTGGAGTTACCACCCGGGTTTAGATTCCACCCCACTGACGATGAACTCGTGAGTCACTACTTGTGTAGAAAGTGTGCTGCTCAGTCCATTGCTGCTCCCATCATCAAAGAAATTGATTTGTACAAGTTTGATCCGTGGCAGCTTCCAGATATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGTGACCGAAAATACCCAAACGGTTCACGACCGAACCGGGCGGCGGGAACCGGGTACTGGAAGGCCACCGGAGCTGATAAACCGATTGGAAAACCGAAAGCCCTAGGAATTAAGAAAGCCCTTGTCTTCTACGCGGGGAAAGCCCCAAAAGGAGTCAAGACCAATTGGATCATGCACGAATATCGCTTAGCCAACGTCGATAGATCTGCCTCCAAGAAAAACAACAATTTGAGGCTTGATGATTGGGTGCTATGTCGAATTTACAACAAGAAAGGGGAGATTGAAAAGTACAATCATGGCGTCGGGGTGGTGGATCAGAAAGTGACGAAATTACCGGAAGAGGTTTATTTCCAGCACGAGATCAAGCCTGAGATCAACCAGTTGTACATGGACACGTCGGATTCGGTGCCGAGGTTAAACACCGACTCCAGCTGCTCCGAGCAAGTGGTTTCGGCCGACGGCACCTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTCGAGTTGGGCCCGGACCTGGTTTCGGGCTTCGATTTTAATTTAATGGACCTGTCAGCGGATGACGCTTTTGCCCCTCAGGCCCAATACCAAATGAACCAGCCCTCGTCGTGGCTGGATATGTTCGCGTACCTACCGAAGACATTTTAA 858 0.5047 MPGELELPPGFRFHPTDDELVSHYLCRKCAAQSIAAPIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGEIEKYNHGVGVVDQKVTKLPEEVYFQHEIKPEINQLYMDTSDSVPRLNTDSSCSEQVVSADGTCEKEVQSEPKWNDLELGPDLVSGFDFNLMDLSADDAFAPQAQYQMNQPSSWLDMFAYLPKTF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03456 285 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Lapu3g03456 285 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lapu3g03456 285 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Lapu3g03456 285 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Lapu3g03456 285 PANTHER NAC TRANSCRIPTION FACTOR 56 7 206 - -
Lapu3g03456 285 FunFam NAC transcription factor 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03456 Lapu-Chr3 57833702 57834761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03456 5 285 NAC Transcription Factor Family AT1G01720 64.014 2.22e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g03456 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03456 - - gmx:100170751 515.768