Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03449 ATGGCGAACAACAAGAGCTCCAAGAAACCAATGAGTCTCAACGACAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCTCCCAAACCCTCTTCCAAATCTTTCGATGAAGAATCGATCACGCCGATACAACAACACCAAAACATCCCCCATTTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAATGTCGGACGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCTGCCCTACGATATTTCCACTTCTACTACTAGGCAAAACTTGAACGAGAAACACGAACCAATAACGTTGCAAGAAGAAGAAGAAGGTTCAACCGACGTGGTTAATTCTTCCCCTGGGCAAAGCTCGGATGAGAAACACGAACCCATATTTTCTAAAGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTCCCCCTAAGGAAGAAAGGACGACGAAGGTGAAAGTACAGGGGCGCCGCCGCCTCTGCAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGTGGTTGATGAGTCAAAGTTTGATGAACTGATTGACATTGATTCGCCGATCCCGGTGCCGAGAAATGTTATCCAGATTGAGGAGAGTGGAGGCAAGAATGAAATTAGGGATATTTTGACTGAACTGAACTCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGAAGGTAAAGAAAGTTATGATGATGAGGTTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGTCTGAAGGTAATAAGAATGATGGTGGCGACTGTATTGAGTATGATTCAGAGGATTCTGTTCAAGTGATGGATAATCTTGTTCCAGAGAATGATGGTTCAATAACTTTGACTGGCCCAAGATCTACTTATAAGTTGTCTGCTAAAATTTCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGAGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGATTGTAGCTCCCAAAACGTTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTTCAATACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAATAATTATTTAGATGACGAGGAAAGTGGAGATGACGCTACATGGGACTACATGATACTGGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGAGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGTACACCATTGCAAAATAATCTCAAGGAGTTGTGGGCGTTGTTTAATTTCTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTTCGTGGAAATGACAAGCATGCTTCTGATAGGGAGCAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGTATGAAGAGTGAGGTTTTCAGTCAAGGAGATGAGAAAACAACTACAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCGTTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTAAAGAAAATATGCGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGCTAACATTGCAACAAAATTGGCAATGCACATAGCCGATGTTGCTGACACAGATAGGTTTAGAGATGAGCAGGATGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAAAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTCAATCTTATTCAGGAATGCCTACTATCCCAAGGCTATGACTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGACTAAAGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTTACACTTACGAAAGCTGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCATACCGAATTGGTCAAAAGAAAGATGTCATTGTATATAGACTGATGACGTGCGGAACCGTTGAAGAAAAGATCTACAGGAAACAGGTGTACAAGGGAGGATTATTCAAAACTGCTACCGAGCATAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATAGAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGACGGGGCCACCGGTTCATGATGAACTTGAGGGTGACGAAGTTACAAGGAATCATGGGACTAGATATATTGGGACTTCAAGATCATCTTCATATGACCATATTACTTACGGCTCCGAGTTTGCATTTAATCCTAAGGATGTTACCAAAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGACAAAATTAATCGGCTCTCCCAAACGCTCTCAAATGCGGCTATGATTTCTAAGTTACCCGACAAGGGCGAAAAACTGCAGAAACGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTCAACAGGGGTTGAATATATAG 3081 0.4249 MANNKSSKKPMSLNDSHYRFLQEHSAPPKPSSKSFDEESITPIQQHQNIPHFSAITDFDSPIGLMSDEKHEPIKVHEAEEVVALPYDISTSTTRQNLNEKHEPITLQEEEEGSTDVVNSSPGQSSDEKHEPIFSKEEEAPPDVVDFPPKEERTTKVKVQGRRRLCKIVHEDAGKSVVVDESKFDELIDIDSPIPVPRNVIQIEESGGKNEIRDILTELNSKFELLSVERKPRPKRVEGLVEGKESYDDEVLEYGSAGSSFSPQQESLSEGNKNDGGDCIEYDSEDSVQVMDNLVPENDGSITLTGPRSTYKLSAKISKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYLDDEESGDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREQRVGSSVAKELRDRIQPYFLRRMKSEVFSQGDEKTTTKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANIATKLAMHIADVADTDRFRDEQDVSCKISFIMSLLDNLIPKGHCVLIFSQTRKMLNLIQECLLSQGYDFLRIDGTTKASDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYRVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTGPPVHDELEGDEVTRNHGTRYIGTSRSSSYDHITYGSEFAFNPKDVTKSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFQQGLNI* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03449 1026 CDD SF2_C_SNF 669 800 - -
Lapu3g03449 1026 SMART helicmild6 706 789 IPR001650 -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 256 271 - -
Lapu3g03449 1026 Pfam SNF2-related domain 323 627 IPR000330 GO:0005524|GO:0140658
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 128 143 - -
Lapu3g03449 1026 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 507 IPR014001 -
Lapu3g03449 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 557 IPR027417 -
Lapu3g03449 1026 PANTHER SNF2/RAD54 FAMILY MEMBER 140 1006 - -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 941 962 - -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 93 143 - -
Lapu3g03449 1026 FunFam Protein CHROMATIN REMODELING 24 299 577 - -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 27 54 - -
Lapu3g03449 1026 Gene3D - 580 875 IPR027417 -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 111 127 - -
Lapu3g03449 1026 Coils Coil 987 1014 - -
Lapu3g03449 1026 SMART ultradead3 315 518 IPR014001 -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 944 958 - -
Lapu3g03449 1026 Gene3D - 303 579 IPR038718 -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 254 277 - -
Lapu3g03449 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 853 IPR027417 -
Lapu3g03449 1026 MobiDBLite consensus disorder prediction 1 57 - -
Lapu3g03449 1026 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 839 IPR001650 -
Lapu3g03449 1026 Pfam Helicase conserved C-terminal domain 677 789 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03449 Lapu-Chr3 57758977 57769065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03449 320 843 RAD5 or RAD16-like Gene Family AT1G02670 25.176 5.61e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu3g03449 SNF2_N 2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03449 K20093 - gmx:100779283 1686.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03449 3 57758977 57769065 Lapu3g03449 3 57758977 57769065 ECH