Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03445 ATGATGGAAGATGAGAACCATCCCACTTTGCCAAATGGTTTTAACTCAGCAGGAAGCCCCGAAAGCCCTTGCTTAAAGACAACCAACACAAACACAAACATCAACACCAACACCACCCCAACCACACACAACAACAACAACCATAACCACAACAAAGAACAAGACCGGTTTCTCCCTATTGCCAACGTGGGAAGAATCATGAAAAAGGTCATTCCTTCCAATGGGAAAATCTCCAAGGATGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACTGGAGAAGCCTCAGACAAATGCCAAAGGGAGAAGCGAAAGACCATCAATGGAGATGATGTCATATGGGCCATCACAACCCTAGGGTTTGAGGATTACGTTGAACCCTTGAAAATTTACCTCCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAACAAAGGCTTCAACAACACCAGCAACAACAAAATAATAGTAATAGTAGCCAAGACGACAATAATCAACAATTCAACGCTGCATATGCCTCTTCCAATCTCATTTCTCAGCCTCCTTATGTCCCCTCTGATCAGAAGTTTTCACTACCCTTCTCTCCAAACTCTATTCAGAATCACCAGATTGATTCTGTGGCCCACTGGTATGAATAA 678 0.4248 MMEDENHPTLPNGFNSAGSPESPCLKTTNTNTNINTNTTPTTHNNNNHNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQQQNNSNSSQDDNNQQFNAAYASSNLISQPPYVPSDQKFSLPFSPNSIQNHQIDSVAHWYE* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03445 225 FunFam Nuclear transcription factor Y subunit B-3 46 173 - -
Lapu3g03445 225 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu3g03445 225 Gene3D Histone, subunit A 44 185 IPR009072 GO:0046982
Lapu3g03445 225 MobiDBLite consensus disorder prediction 1 52 - -
Lapu3g03445 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
Lapu3g03445 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 180 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu3g03445 225 MobiDBLite consensus disorder prediction 9 47 - -
Lapu3g03445 225 SUPERFAMILY Histone-fold 54 173 IPR009072 GO:0046982
Lapu3g03445 225 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Lapu3g03445 225 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Lapu3g03445 225 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Lapu3g03445 225 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03445 Lapu-Chr3 57725395 57726072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03445 39 223 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.452 1.43e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu3g03445 CBFD_NFYB_HMF 4.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03445 K08065 - gmx:100778216 305.834