Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03436 ATGAACGAATCTCAAAACTCCATTCCTCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGTAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGACACTTGATCGATCAGTGGCTTCAACTGGGTCCCCTATTCGACCCTGCCAACCCTGAAACTTCAACTATTAACTCCTTAGCTTATCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGCTCCAAGCACTCAGGAAAATCAGTCTCTTATCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTCCAATTGAACTTCTTACCACTGCTTTTAGAACTAGTTTTCGGAACTCAAGTATCATTAAGTCACATGAACTTCATAGAGCTAGCACTTTGTTGCATTCAGAAATTGCTGCCACTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATCGTCATCTGAGACAGAAGATTTATGCTATATTCTTGGAAACTCTCACAAACTAGTGCACGAGATTGTTAAAGTTGTTAACCAAAACTACGAAGTTTCTGGAGATGCAATTAAAGCAATGTCAGCACTATGTTCGTTGCAATCCAACAGAGAGAGTTTGGTGAGAGGAAGAGCAATAGATGGTATCATGAGATACATCTCATCAGAAAGAAGAAACGTGGCCCCAGTGGCAGTGAGAACAGTTGAGAAACTTATGGGGCTGGAAAGTGCCAAAGTGGCATTGGTGAATCACCCTACTGGTGTACGGACTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGAGAAACAGCCATTGAAAGTGGAGTTTTGACTCGGTTGTTATTGCTCCTGCAGAGTCAGTGTAGTAACACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGCTAAGATCAGAGCCAAAGCAGGGTTAG 1173 0.4194 MNESQNSIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTINSLAYLKRNLESHESSLENKLQALRKISLLSDEYCSFNKSCFLQLNFLPLLLELVFGTQVSLSHMNFIELALCCIQKLLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASSSSETEDLCYILGNSHKLVHEIVKVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGRAIDGIMRYISSERRNVAPVAVRTVEKLMGLESAKVALVNHPTGVRTLVNMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLLQSQCSNTTKSKARMLLKLLRSEPKQG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03436 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Lapu3g03436 390 Gene3D - 88 298 IPR011989 -
Lapu3g03436 390 SUPERFAMILY RING/U-box 4 76 - -
Lapu3g03436 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Lapu3g03436 390 Coils Coil 98 118 - -
Lapu3g03436 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Lapu3g03436 390 SUPERFAMILY ARM repeat 96 383 IPR016024 -
Lapu3g03436 390 CDD RING-Ubox_PUB 9 56 IPR045210 -
Lapu3g03436 390 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Lapu3g03436 390 PANTHER WDSAM1 PROTEIN 7 386 IPR045185 GO:0061630
Lapu3g03436 390 Gene3D - 310 389 IPR011989 -
Lapu3g03436 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03436 Lapu-Chr3 57632861 57634510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03436 8 384 U-box Gene Family AT1G49780 30.946 9.91e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03436 - - vum:124836871 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03436 3 57632861 57634510 Lapu3g03436 3 57632861 57634510 ECH