Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03430 ATGGCTGTAACGAAATTGATACCGGGGTTTCGGTTCCACCCCTCTGGTGTGGAGTTAGTCGTGTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTCTGTAGTGGTGTCATTACTGAACTTGACATATACAAGTATGATCCATGGGATCTCCCAGATAAGTCTTGTCTAAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCGCTGGAGAAGAAATATGGCAGTGGGAGTAGGATGAAGCGCTGTACTGAAATTGGGTACTGGAAAGCTACTGGGAAGGATAGAGTTGTTCAGCACAATAATCAAACGGTGGGGATGATTAGAACACTGATATTTCACAAGGGTAAATCGCCGAAAGGTGAAAGAACTGATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGCACAGGATTCCTATGTAGTGTGCAAGGTATTTCAAAAGGAAGGTCTTGGTCCCAGGAATGGTGCGCAATATGCAAGACCATTTAATGAGGAAGAGTGGAACGATGAAGAACTGGGAATACCTTGTACTGCTTCCACTGCACCATTTCCCATTTTGCCTATGATATCTGATGGTTCTGTCGCAAAGGACAATCCCTTCCCTGCTAGTGGATGTATTGGGTCACCATCCACATCGTGTCTATCAAGATCAGTGCCTTCATCTGGCACAGCGAATCCTTCTGATCCGAATGATCAAGCTGTTAACAATGATTATGAAGATATTTTATCTATGGATGATATTCTTGAAGATGGTGACGAAGTGTTTGAGGTTGATAATGGTCAAGAAAACAATGCTGAAGATGCACCAACTTCAGATGATTTTTTTGAGGGCTTGGAAGACTATTGGGCTGCTTTTCGTGCTGGTTTCTCCTCTTGCCAGAATACTGAATTTAGTACAAACGAAATGGCTACTGCAGGTGATGTCGGGAGCTTGGATGGCTTGGACTTCCTAGAGTTAACTGACCTAGACATCCCATTATAG 1008 0.4355 MAVTKLIPGFRFHPSGVELVVYFLKRKVMGKKFCSGVITELDIYKYDPWDLPDKSCLRTGELEWYFFCPLEKKYGSGSRMKRCTEIGYWKATGKDRVVQHNNQTVGMIRTLIFHKGKSPKGERTDWVMHEHRLEDKDLADKGIAQDSYVVCKVFQKEGLGPRNGAQYARPFNEEEWNDEELGIPCTASTAPFPILPMISDGSVAKDNPFPASGCIGSPSTSCLSRSVPSSGTANPSDPNDQAVNNDYEDILSMDDILEDGDEVFEVDNGQENNAEDAPTSDDFFEGLEDYWAAFRAGFSSCQNTEFSTNEMATAGDVGSLDGLDFLELTDLDIPL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03430 335 FunFam Nac domain-containing protein 86 15 159 - -
Lapu3g03430 335 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
Lapu3g03430 335 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Lapu3g03430 335 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Lapu3g03430 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 229 - -
Lapu3g03430 335 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03430 Lapu-Chr3 57567402 57571694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03430 1 268 NAC Transcription Factor Family AT5G64060 50.000 3.08e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g03430 NAM 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03430 - - vra:106770001 513.457