Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03425 ATGGACACCAACCAGAACACCACCACTAGTGCATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAACAACATCAACAACATCATGACCATATTATTCTCCAAGTCCAAGACCCTCTGGCTTCTGGGATTTGGCCCAACAACTACCCCCACAATCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCACAACAACCTCATCCATTGTACCACCACCCTCCTCCTCAGGTTTCCTTGGAGACATACTAGGTGTTCACAACATGGAAGAAGATGAAGAGCCTGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATCCGTAAACCAAAGAGAAGAAACGTTCGCATCAGCGATGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTGGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTACTTCAATCCATCCCTCACCCTTCTCAACCACCACAATGCATTGGTTTTGCTACCACAAATGCTAGCACCTTGCTGTTAGCCCCTTCTTGTGATTGGTCTTTTGCACCAAATGTGTTACTCAGTTCCACCGCCGTAACCGCGGCCGCGGCCTCTTCCTCCTCCATGGACATGCCGGCAGGACTCGGATTCGAAACCCGTGGGCATGCTTGTGACGGCTCCTCCAGCTTTAATCAGCATGAGGGTATGTGTATGTTGATGATGAGTGTTTGA 855 0.4924 MDTNQNTTTSAFTNVNSTWNLEKMETNEQQQHQQHHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQTPPTTTSSIVPPPSSSGFLGDILGVHNMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAAAASSSSMDMPAGLGFETRGHACDGSSSFNQHEGMCMLMMSV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03425 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Lapu3g03425 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 199 IPR036638 GO:0046983
Lapu3g03425 284 FunFam BHLH transcription factor 143 205 - -
Lapu3g03425 284 Gene3D - 143 201 IPR036638 GO:0046983
Lapu3g03425 284 CDD bHLH_AtIND_like 141 198 - -
Lapu3g03425 284 SMART finulus 146 195 IPR011598 GO:0046983
Lapu3g03425 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 228 IPR045843 GO:0003700|GO:0006355
Lapu3g03425 284 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03425 Lapu-Chr3 57492735 57493739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03425 109 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.775 6.02e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03425 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03425 - - gmx:100775296 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03425 3 57492735 57493739 Lapu3g03425 3 57492735 57493739 ECH
Lapu3g03425 3 57492735 57493739 Lapu9g01142 9 24922059 24923002 PCT