Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03424 ATGAATTATCTCTTCTTTCTCTCTCTCTCCCTCCTCATAACCCTCTCCGCCGCGCACCGAAAAGCACCGCCCGTCGCCGCCGCCAAATCCGTCACGCCGCAGATCCAACAAGCCTGCGCCGCCACGCGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAATACCCCAAACTCCCGGCGAACCCGACCTCTCTCCAGTTCGTCCAGTCCGCCATCGCCATCTACACCGAAAACCTCGCCACCGCGCAGTCCATGGTGAAGTCCCTCCTAGACGACGCCGCCGGCAGCCGCAACCTCACCGTGGCCGCCTCCACCTGCGTGGAAGTGTTGGACAACTCGAACCGCCGCACTTCCCTCGCCAGCGACGCGCTGCCACTCGGCAAAATCAAGGACGTGCGCGCGTGGCTGGGCGCCGCCCTCGCCTACCAGTACGACTGCTGGAACAGTCTCAAATATGCGAACGTGTCCGCCGCCGTCGGCAAATCGATGGCATTCATCGACTCCCTCGAATCTCTCTCCAGCAACGCCCTCAGTATGGCTTTCTCCCTTGACGCCTACGGAAACGATACGGCTTCGTGGAAGCCTCCCACCACCGAGCGCAATGGCTTCTGGGGGACCCTCGTCTCCGGCGAATCCTCCCCCGTGGGAGGTGTTCCGTCCAATTTGAAACCCGACGTTACGGTCTGTAACGACGGAGCCGGCTGTTATAAAACCATACAAGAGGCCGTTAACGCTGCGCCAGATAACGGCGACGGGACGAAGAGGTTTGTCATACTCATAAAAGAAGGAGTTTACAAGGAGACCGTCAGGGTTCCGTTAGCAAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGCAAGACGGTCATAACCGGTGACGCTAACGTGGGGCAACCAGCCATGACAACGTACAACTCTGCCACCGTAGCCGTTCTTGGGGATGGATTCATGGCAAGGGATCTGACTATTGAGAACACAGCTGGGCCTGATGCACACCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGTTCGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCGCACTCCCTGCGCCAATTCTACAAGTCATGCCGCATTGAGGGCAACGTCGACTTTATCTTCGGAAACGGAGCTGCAGTTTTTCAAGACTGTCTCATCCTGGTTCGTCCCAGGCAACTGCATCCAGAGAAGGGCGAGAACAATGCTATCACTGCACATGGCAGAACAGACCCTGCACAACCCACAGGCTTTGTTTTCCAGAATTGCCTCATTAATGGCACTGAGGAGTACATGGCTCTGTATCACAGCAACCCTAAGGTGCACAAGAACTACTTGGGCAGGCCCTGGAAGGAGTATTCCAGAACAGTTTTCATTAATTCAGAGTTGGAGGTGATTTTGACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCCCTCAAGACACTGTATTATGGGGAGTTTGGGAACAGGGGACCTGGTTCTGATTTGTCTCAGAGGGTGCCCTGGAGTAGCAAGGTCCCTGAAGCCCACGTCGTAGCGTATTCAGTGCAGAATTTCATTCAAGGAAATGATTGGATTCCATCATCATCTGCCGGTACCCCTTCGTCGTAA 1632 0.5533 MNYLFFLSLSLLITLSAAHRKAPPVAAAKSVTPQIQQACAATRFPQQCETSLSQYPKLPANPTSLQFVQSAIAIYTENLATAQSMVKSLLDDAAGSRNLTVAASTCVEVLDNSNRRTSLASDALPLGKIKDVRAWLGAALAYQYDCWNSLKYANVSAAVGKSMAFIDSLESLSSNALSMAFSLDAYGNDTASWKPPTTERNGFWGTLVSGESSPVGGVPSNLKPDVTVCNDGAGCYKTIQEAVNAAPDNGDGTKRFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPAMTTYNSATVAVLGDGFMARDLTIENTAGPDAHQAVAFRSDSDLSVFENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNGAAVFQDCLILVRPRQLHPEKGENNAITAHGRTDPAQPTGFVFQNCLINGTEEYMALYHSNPKVHKNYLGRPWKEYSRTVFINSELEVILTPQGWMPWSGDFALKTLYYGEFGNRGPGSDLSQRVPWSSKVPEAHVVAYSVQNFIQGNDWIPSSSAGTPSS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03424 543 Gene3D - 219 540 IPR012334 -
Lapu3g03424 543 FunFam Probable pectinesterase/pectinesterase inhibitor 51 33 182 - -
Lapu3g03424 543 FunFam Pectinesterase 219 542 - -
Lapu3g03424 543 SUPERFAMILY Pectin lyase-like 222 536 IPR011050 -
Lapu3g03424 543 PANTHER PECTINESTERASE 14 534 - -
Lapu3g03424 543 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Lapu3g03424 543 NCBIfam pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Lapu3g03424 543 CDD PMEI-like_3 38 179 - -
Lapu3g03424 543 Pfam Pectinesterase 225 530 IPR000070 GO:0030599|GO:0042545
Lapu3g03424 543 SMART PMEI_2 30 179 IPR006501 GO:0004857
Lapu3g03424 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 179 IPR035513 -
Lapu3g03424 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 183 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03424 Lapu-Chr3 57461197 57463750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03424 24 532 Carbohydrate Esterase AT5G09760 62.451 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03424 - - gmx:100819675 867.455