Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03418 ATGGTTAGGGACGATCTGTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCGCTCGACGTCATGAAATCCCCTGTCTGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACGTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTCGTTCCTAACCGAACCTTACAGAGACTCATCCAGATCTGGTCTGACTCCCTCCACCATCCACTCCACTCCCCTTCCTCCACCCACTCCCAATCCTCCCCCTCCAAAGACCAAATCCTCCTCGCTATCTCCCAATTGCAGACTCTCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCGCGCGGTTCGCTCGAGATTCCGAAGAGAACCGCGATTTTCTTGTCAGGACGGAATGCTTTGTCCCGCTGCTGATTGGCTTCCTCGATAATGTCAATGGCGGCCTCGAGTTCCTCGAACAGGTCGTTACGGAGTTGGATTTGGTTGTCGGGAAAATGGAAGATGGTGAGGGGCTGAAAAACTTGATACTGAAGAGGCAGGGCGAGGGAGAAAAACAGAGCCTAGATTCTCTGCTTATCCTTCTCCAACAAGGAAGCCATGCCGCACAAATCGCATCGGTTAGGGTTGTGAAATCGGTGGCGGTGGACGTGGAATCGAAACTGTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCAGAGAAAGATCCGGATCTAATTGAGAACTGTTTGTCGTGCCTGGTCGCGATTTCGACTCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTGGGAGCGGTTAAGGTCTTAACGAAGCTTCTTTCGGCTTCGAACATGAGCGTGTTGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTCGGACATATGCGAGGATTCTGCGTGCGTGGCGGCGATAGTGAACAAGGTACTGAAAGTGTCTAGCGTGGCAACGGAACACGCCGTTACGACTCTGTGGAGCGTGTGCTATCTGTTTCGGGATCAGACGGCGCAAGAGGCCGTTATGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTCCGCCAAATGTCTGCGGATTTGCTCAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 1248 0.5248 MVRDDLYITVPSFFRCPISLDVMKSPVCLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSPSSTHSQSSPSKDQILLAISQLQTLADNRFDSLAKIARFARDSEENRDFLVRTECFVPLLIGFLDNVNGGLEFLEQVVTELDLVVGKMEDGEGLKNLILKRQGEGEKQSLDSLLILLQQGSHAAQIASVRVVKSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIENCLSCLVAISTPRRSKMKLVRLGAVKVLTKLLSASNMSVLVTEKVLKLVETVSSTKEGRSDICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVMKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03418 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lapu3g03418 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lapu3g03418 415 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Lapu3g03418 415 Gene3D - 296 395 IPR011989 -
Lapu3g03418 415 Gene3D - 186 295 IPR011989 -
Lapu3g03418 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lapu3g03418 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Lapu3g03418 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Lapu3g03418 415 SUPERFAMILY ARM repeat 95 397 IPR016024 -
Lapu3g03418 415 CDD RING-Ubox_PUB 11 63 IPR045210 -
Lapu3g03418 415 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03418 Lapu-Chr3 57403629 57405195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03418 1 415 U-box Gene Family AT5G64660 52.113 2.20e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03418 - - vra:106764800 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03418 3 57403629 57405195 Lapu3g03418 3 57403629 57405195 ECH