Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03413 ATGGATTATGAGCAATTTGATTTCTCATTTGGCCCTCCCTACATTAACCAACTCCACGAGTGTTGCTTAGAAAATGCATTTCCATTTCAAACAGAAGATGTATTTTCACCAAATGCCATCCTGGATCAAATGTTTGATCAAGAGTCCGTGGAGGGCTTGCTTCTGCAACACACAAACAACCAGGACTTTGGTTTCATGAATCACAATGATCCACTACAGACTGAACTCTGTCATGGATTTGCCCCTAGTCCTGAGGAAAATGTGGATGTTTCAATGGAAGAAGGAGATTCTTATTTGAAGGGAATCCAAGCAGAGCTAATGGAACAGACTAGTTTAGCTGATCTTTTGTTAACAGGAGCTGAAGCTGTTGAAGCACACAACTGGGCCCTTGCTTCAGACATAATTGAGAAACTTAATAATGCATCATCTTTAGAAACCGGTGGTGGTTTGTTGAACAGGTTGGCTCTTTTCTTTACTCAGGGTCTGCATTATAAAAGTACAAATGCCCCTGAACTGTTGCAGCGTGATGATGTTTCTACACACACAAATGCTTTCTGTGTGTTTCAGGTTCTCCAAGAACTCTCTCCTTATGTGAAATTTGCTCATTTCACCGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGCTGAGAGTGTTCACATCATTGATTTTGACATCATGGAGGGGATCCAGTGGCCACCCTTGATGGTTGACCTTGCAATGAGGAAAAGCACTACTTCCCTTAGAGTGTCAGCCATCACAGTGGACCAGAAAGGTGCTGCTTCTGCTCAACAAACAGGAAGAAGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCGTTCAGGTTTGATCAGATAATGATAGCAAAGGAAGAAGATATTCAAGGAATTGAACTTGGTCAAACACTCATGGTCAACTGTATGATACACCAGTGGATGCCTAATAGGAGCTTCTCATTGGTCAAAATATTTTTGGATGGTGTGACCAAATTGTCCCCAAGGCTTGTGGTTTTAGTGGAAGAAGAACTATTTAATTTTTCTAGGCTCAAATCCATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACATTGCACTCTGTGATTCACTTGCTGGCAGTCTACGTGATAACCACAAGATGGAGTTGACCCTGATAGAGAAAGAGATTCTGGGGCTCAGAATCTTAGACAGTGTGAAGCAGTTTCCTTGTGAGAGAGAGGAGAGAAAGGTTTGGGAGGAAGGATTTTATTCCTTGAAAGGGTTTAAATGTGTTCCTATGAGTACATGTAATATTTCACAAGCCAAGTTCTTGGTAAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCCTGTGTTGGAAGTCAAGGCCTTTGACCGTGGCTTCAATCTGGGTACCAAGGAGTTATTCGAGTGACAAAGTCAAATAG 1449 0.4251 MDYEQFDFSFGPPYINQLHECCLENAFPFQTEDVFSPNAILDQMFDQESVEGLLLQHTNNQDFGFMNHNDPLQTELCHGFAPSPEENVDVSMEEGDSYLKGIQAELMEQTSLADLLLTGAEAVEAHNWALASDIIEKLNNASSLETGGGLLNRLALFFTQGLHYKSTNAPELLQRDDVSTHTNAFCVFQVLQELSPYVKFAHFTANQAILEATEGAESVHIIDFDIMEGIQWPPLMVDLAMRKSTTSLRVSAITVDQKGAASAQQTGRRLKEFAASINFPFRFDQIMIAKEEDIQGIELGQTLMVNCMIHQWMPNRSFSLVKIFLDGVTKLSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYIALCDSLAGSLRDNHKMELTLIEKEILGLRILDSVKQFPCEREERKVWEEGFYSLKGFKCVPMSTCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPRSYSSDKVK* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03413 482 ProSiteProfiles GRAS family profile. 103 472 IPR005202 -
Lapu3g03413 482 Pfam GRAS domain family 113 471 IPR005202 -
Lapu3g03413 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 467 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03413 Lapu-Chr3 57359254 57360702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03413 186 471 GRAS Transcription Factor Family AT1G55580 36.859 7.24e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu3g03413 GRAS 5.4e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03413 - - gmx:100804613 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03413 3 57359254 57360702 Lapu3g03413 3 57359254 57360702 ECH