Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03411 ATGTATGCTTCAACTTCCTTTACTTCACAATTGGTCCATGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGACCCACTTCATCAATCAATCAACTCACCTGACTTAGCCAAATCCCCAGATTCCATGATTTACAACTCAACGGACTCATATTTCAAAGGTCGTGACTTCGACGCAAATGTTGTCATGATACTCTCAGTCCTCTTGTGTGCTGTTATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTCTTGAGGTGCTCAAACATAGTCATCAACGACCCTTCAAGTGTGAGCTACAACCCTTCCCCACGATTGGTCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACCGTGAGCTACTCCACAGAGTTGAAACTCCCAGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTTGTCAATGCTGATAAGGTACGCATTTTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAAATGGCTAAGTTCGCACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGAACCCAACCACCAGTACCACCAGTGCCAGAAACCATTATAAGGATCCAACCACTAGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 681 0.4479 MYASTSFTSQLVHDLLMDSSSRKLLLQDPLHQSINSPDLAKSPDSMIYNSTDSYFKGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINDPSSVSYNPSPRLVNTGIKKKALKTFPTVSYSTELKLPGLDTECVICLSEFVNADKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGTQPPVPPVPETIIRIQPLEPEGLERNYREVC* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03411 226 CDD RING-H2_EL5-like 140 183 - -
Lapu3g03411 226 PANTHER RING-H2 FINGER PROTEIN ATL78 17 217 IPR044602 GO:0016567|GO:0016740
Lapu3g03411 226 SMART ring_2 141 182 IPR001841 -
Lapu3g03411 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 187 IPR013083 -
Lapu3g03411 226 SUPERFAMILY RING/U-box 119 189 - -
Lapu3g03411 226 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lapu3g03411 226 Pfam Ring finger domain 140 183 IPR001841 -
Lapu3g03411 226 FunFam RING-H2 finger protein ATL73 104 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03411 Lapu-Chr3 57328924 57329604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03411 60 187 C3H Transcription Factor Family AT3G10910 50.376 1.67e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03411 K19040 - gmx:100527126 402.519