Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03403 ATGGATTCTAAGGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGACGTTGATGGATGTCGCCATCGCAGTGGCGTCTGTTGACCATGGTGATGAATTGAAGCGTCGAAGAGACGGAATCGTGGAGCGCCTCTATGCGACGAGTTCCGTGTCATCATCGCGGTGTGCAAATTGTGATGACGACGACGTTAGAGAAATCGCGATGCAAAGCAATCCGTCCGCGGAGGACGAAAAGGATACTTACGAAGTCTTGTTTGACGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCTGAAGATTCGTTGTTGGAGCTGCTGCAGAATCTAGCAGACATGGATATTACATTCCAAGCCTTAGAAGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGAAAACATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTCGTCAGGAAATGGAAGGAAATTATAGATGAATGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTGCTGTCATGGCAGACGAGGACTCGACACAAGAGAAAATCCTACAAAATGGGCATCGTCAGATTCCCGATTTTGCAGACTCACCAAATCCACACAATGAGAGCTTTCGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCGCAAAGAATCTCCCCTGAAACCATCGGCATCAGTTACTACTCCTACTCTTGCACCTCAAAACAGACAACGAGAGAGCAATATTGAGTTGGATAAACTTGCTTCAGCGAGAAAACGACTTCAAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAACAAAGAACGATTCAGGTGATGGACCTCCATGAGTTACCAAAACCCAAGAATGCCTTCTTCGGCAAAACCAAAGGTGGCACCAGTCAGGGAAGACACTGGTGA 951 0.4574 MDSKDFRSILESAGIDIWTLMDVAIAVASVDHGDELKRRRDGIVERLYATSSVSSSRCANCDDDDVREIAMQSNPSAEDEKDTYEVLFDDEQKKILEIKEQLEDPHQSEDSLLELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTAVMADEDSTQEKILQNGHRQIPDFADSPNPHNESFRSEHNNIEPQQRKPKAIPRKESPLKPSASVTTPTLAPQNRQRESNIELDKLASARKRLQENYKEVANAKKQRTIQVMDLHELPKPKNAFFGKTKGGTSQGRHW* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03403 316 CDD TFIIS_I 92 165 - -
Lapu3g03403 316 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Lapu3g03403 316 Coils Coil 254 284 - -
Lapu3g03403 316 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 178 IPR035441 -
Lapu3g03403 316 MobiDBLite consensus disorder prediction 210 233 - -
Lapu3g03403 316 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Lapu3g03403 316 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 316 IPR044790 -
Lapu3g03403 316 SMART TFS2_5 95 166 IPR003617 GO:0005634
Lapu3g03403 316 MobiDBLite consensus disorder prediction 198 259 - -
Lapu3g03403 316 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Lapu3g03403 316 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03403 Lapu-Chr3 57275749 57278225 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lapu3g03403 Med26 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03403 - - gmx:100796457 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03403 3 57275749 57278225 Lapu3g03403 3 57275749 57278225 ECH
Lapu9g01164 9 25178271 25183428 Lapu3g03403 3 57275749 57278225 ECH
Lapu3g03403 3 57275749 57278225 Lapu9g01164 9 25178271 25183428 PCT