Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03398 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTAGATTCCTCTAAGAAGAAGAAGGAGATCACCGAAAAGAGCGAGAGGAGTTACCGGAAGCGTGACGTGGACGACGATCTCCACGCCGACGAAAGGAGGAGCAAGAGGAGGGGTGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAGAGAGACAGGGACAGAGACCGCGAACGTGACCGTTCCTCCGGCCGTCACAGGGGCGAAAGGGAGAGAGACGGAGAGAAGAAAGAGAGGGACAAGGATAGAGAGAGGAGGGATAAGGATAAGGACAAGGACAAGGAGAAGGATAGGGATAGGAGAGATCGTGATAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGACAGGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCATGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTTGAACCTGAGGCAGATCCAGAAAGAGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGGGATGTGTATGAGTTCTTTTCGAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCGATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTGATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAACGCTTCTGGCGGAGCGGCTGGTGTAGCTGGTCCGTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTACGAGAGATTTTTGAGCCATTTGGTCCTGTGGAGGTTGTCCAGCTGCCTCTTGACTTGGAAACAGGTCACTGCAAGGGTTTTGGCTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCCGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTGGATGATGACGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCGAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCCATTGGTGCACCAGTTCTACCAGCACAAGTGATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTAGCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCCATCTTCATGCAACCACAACTATATGAAGCCAAGTTTAAAGGGGAGTGA 1647 0.4797 MDFDEYEYLEKTVEEDVDSSKKKKEITEKSERSYRKRDVDDDLHADERRSKRRGDDENGGSKKDRDRDRERDRDRDRERDRSSGRHRGERERDGEKKERDKDRERRDKDKDKDKEKDRDRRDRDRDKEKERERRERDREREERERSRRSMSRSERDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPSTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFKGE* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03398 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Lapu3g03398 548 CDD RRM1_RBM39_like 190 262 - -
Lapu3g03398 548 SMART rrm1_1 190 262 IPR000504 GO:0003723
Lapu3g03398 548 SMART rrm1_1 456 533 IPR000504 GO:0003723
Lapu3g03398 548 SMART rrm1_1 292 365 IPR000504 GO:0003723
Lapu3g03398 548 Coils Coil 124 156 - -
Lapu3g03398 548 Gene3D - 451 548 IPR012677 -
Lapu3g03398 548 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu3g03398 548 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 473 IPR029123 -
Lapu3g03398 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 531 IPR000504 GO:0003723
Lapu3g03398 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Lapu3g03398 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 258 IPR000504 GO:0003723
Lapu3g03398 548 SUPERFAMILY RNA-binding domain, RBD 451 536 IPR035979 GO:0003676
Lapu3g03398 548 MobiDBLite consensus disorder prediction 13 161 - -
Lapu3g03398 548 NCBIfam splicing factor, CC1-like family 77 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lapu3g03398 548 Gene3D - 287 383 IPR012677 -
Lapu3g03398 548 CDD RRM3_RBM39_like 454 536 - -
Lapu3g03398 548 MobiDBLite consensus disorder prediction 1 161 - -
Lapu3g03398 548 FunFam Splicing factor CC1-like 114 273 - -
Lapu3g03398 548 Gene3D - 118 273 IPR012677 -
Lapu3g03398 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Lapu3g03398 548 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Lapu3g03398 548 FunFam Splicing factor, CC1-like protein 450 548 - -
Lapu3g03398 548 SUPERFAMILY RNA-binding domain, RBD 290 369 IPR035979 GO:0003676
Lapu3g03398 548 FunFam Splicing factor CC1-like 274 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03398 Lapu-Chr3 57218282 57226434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03398 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.96e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03398 K13091 - gmx:100793461 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03398 3 57218282 57226434 Lapu9g01167 9 25208838 25226794 ECH
Lapu3g03398 3 57218282 57226434 Lapu3g03398 3 57218282 57226434 ECH
Lapu3g03398 3 57218282 57226434 Lapu9g01167 9 25208838 25226794 PCT