Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03396 ATGGCGAATGATAGAGAAAAGGGTAACGAGGTTGACGAGAGTTACTATGGTGAAGCGAGAGACTTTCACTCGTTGTCAGTGCCAACGATGTTTTCAGGGTTGAATAGGGAGAAGGAGATGTCAGCCATGATCTCTGCTTTGACTCGTGTTGTCCGTGGAGAGGAACATGGTCATGGTCATTCCCTTCTTCATCAGAAGATTGATAACAGTGCAATTGGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTTTATCATAACATCAAACATGGCTTCAGGTTCCATGGCACCATCATCTTCTTCTGCATGTTCATCTTATTGTGGAAACTCTGTTCTGAAGAGAAGTAGGGAAGGTGAGAATGGAAGTGATCTCTCACGTGGAGCTGCATTCCCTGCTATTTCAACACATAGAGACGGGGAAAGTTCAAGCAGGGTGAGGAGAAGGGAAAGTGGAGAAATGGAGAATAGGGTATACGATTACGAGTACAGGGCAGAGAGGGTGAGAGTGGAAGAGGAAACGAAGAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCATCTAGGGTGTGGTTAGGAACATTCGACACTGCTGAGGATGCAGCCAGAGCCTATGATGAAGCTTCCTTGCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTCAGGCTCAGACAGCAGCCACCTCAACCGCCACCATCACCCCTCTTCTCCATTCCGTCTACAACTGAACCCATTGTTCACACTCAGCCTCAGGGTTCACGTAATTCCGGCAACTTTTACGAATATTGTTATTCGCATGTTCAGGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCTGTTTCATCGCCATTCTCTATGGCCAATTCTCATCTTCAATCTTCATCTTCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCATCTCTTCTTCCTTCCCTTTATGCTACCCACCTACCCCCATGGTCTTCTTCCTCTTCCTCTTCTTCTCCTGCTGCTGCTGCTGCTGCTTATACTAATACCTCTCCTCCTTCCGGCTCCTAG 1095 0.4804 MANDREKGNEVDESYYGEARDFHSLSVPTMFSGLNREKEMSAMISALTRVVRGEEHGHGHSLLHQKIDNSAIGGCGGGGGGGGGGFIITSNMASGSMAPSSSSACSSYCGNSVLKRSREGENGSDLSRGAAFPAISTHRDGESSSRVRRRESGEMENRVYDYEYRAERVRVEEETKRKYRGVRQRPWGKWAAEIRDPFKASRVWLGTFDTAEDAARAYDEASLRFRGNKAKLNFPENVRLRQQPPQPPPSPLFSIPSTTEPIVHTQPQGSRNSGNFYEYCYSHVQEFPVSLYDQVAVSSPFSMANSHLQSSSSYSSSSTITSSQPSLLPSLYATHLPPWSSSSSSSSPAAAAAAYTNTSPPSGS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03396 364 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Lapu3g03396 364 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 PANTHER DNA-BINDING DOMAIN 145 319 IPR044808 GO:0003700|GO:0009873
Lapu3g03396 364 MobiDBLite consensus disorder prediction 337 364 - -
Lapu3g03396 364 Pfam AP2 domain 178 227 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 CDD AP2 178 237 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 MobiDBLite consensus disorder prediction 241 255 - -
Lapu3g03396 364 MobiDBLite consensus disorder prediction 239 269 - -
Lapu3g03396 364 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Lapu3g03396 364 MobiDBLite consensus disorder prediction 118 152 - -
Lapu3g03396 364 Gene3D AP2/ERF domain 177 237 IPR036955 GO:0003700|GO:0006355
Lapu3g03396 364 FunFam Ethylene-responsive transcription factor 2 177 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03396 Lapu-Chr3 57201802 57203154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03396 176 251 AP2-EREBP Transcription Factor Family AT2G33710 73.684 3.15e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g03396 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03396 - - var:108344045 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03396 3 57201802 57203154 Lapu3g03396 3 57201802 57203154 ECH
Lapu3g03396 3 57201802 57203154 Lapu9g01170 9 25281529 25282668 ECH